Difference between revisions of "TRANS-RXN0-623"

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(Created page with "Category:reaction == Reaction UDPGLUCEPIM-RXN == * direction: ** reversible * common-name: ** udp-glucose 4-epimerase * ec-number: ** [http://enzyme.expasy.org/EC/5.1.3.2...")
(Created page with "Category:reaction == Reaction TRANS-RXN0-623 == * direction: ** left-to-right * common-name: ** long-chain fatty acid-coa ligase ** fatty acyl-coa synthetase (transporting...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction UDPGLUCEPIM-RXN ==
+
== Reaction TRANS-RXN0-623 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** udp-glucose 4-epimerase
+
** long-chain fatty acid-coa ligase
 +
** fatty acyl-coa synthetase (transporting)
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.1.3.2 ec-5.1.3.2]
+
** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-12575]][c] '''<=>''' 1 [[CPD-14553]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[CPD66-39]][e] '''+''' 1 [[PROTON]][e] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Saturated-Fatty-Acyl-CoA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ16452]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ13972]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ19552]]
+
* Gene: [[SJ05591]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ08690]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ08692]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ03650]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ17935]]
+
* Gene: [[SJ08691]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6317]], D-galactose degradation I (Leloir pathway):
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7344]], UDP-&alpha;-D-galactose biosynthesis:
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[COLANSYN-PWY]], colanic acid building blocks biosynthesis:
 
−
** '''6''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-6397]], mycolyl-arabinogalactan-peptidoglycan complex biosynthesis:
 
−
** '''1''' reactions found over '''18''' reactions in the full pathway
 
−
* [[PWY-7328]], superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis:
 
−
** '''5''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY66-422]]:
 
−
** '''5''' reactions found over '''n.a''' reactions in the full pathway
 
−
* [[PWY-3821]], D-galactose detoxification:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6527]], stachyose degradation:
 
−
** '''7''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR124064
−
* METANETX-RXN : MNXR143428
+
{{#set: direction=left-to-right}}
−
* RHEA:
+
{{#set: common-name=fatty acyl-coa synthetase (transporting)|long-chain fatty acid-coa ligase}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22171 22171]
+
{{#set: ec-number=ec-6.2.1.3}}
−
* LIGAND-RXN:
+
{{#set: nb gene associated=6}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00291 R00291]
+
{{#set: nb pathway associated=0}}
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P35673 P35673]
 
−
** [http://www.uniprot.org/uniprot/P22715 P22715]
 
−
** [http://www.uniprot.org/uniprot/P21977 P21977]
 
−
** [http://www.uniprot.org/uniprot/P24325 P24325]
 
−
** [http://www.uniprot.org/uniprot/Q9CE66 Q9CE66]
 
−
** [http://www.uniprot.org/uniprot/Q57664 Q57664]
 
−
** [http://www.uniprot.org/uniprot/P55180 P55180]
 
−
** [http://www.uniprot.org/uniprot/Q9PNG3 Q9PNG3]
 
−
** [http://www.uniprot.org/uniprot/P56997 P56997]
 
−
** [http://www.uniprot.org/uniprot/Q59083 Q59083]
 
−
** [http://www.uniprot.org/uniprot/Q44016 Q44016]
 
−
** [http://www.uniprot.org/uniprot/Q45291 Q45291]
 
−
** [http://www.uniprot.org/uniprot/P96995 P96995]
 
−
** [http://www.uniprot.org/uniprot/P45602 P45602]
 
−
** [http://www.uniprot.org/uniprot/P18645 P18645]
 
−
** [http://www.uniprot.org/uniprot/P26503 P26503]
 
−
** [http://www.uniprot.org/uniprot/P40801 P40801]
 
−
** [http://www.uniprot.org/uniprot/Q05026 Q05026]
 
−
** [http://www.uniprot.org/uniprot/P56985 P56985]
 
−
** [http://www.uniprot.org/uniprot/Q51148 Q51148]
 
−
** [http://www.uniprot.org/uniprot/Q56093 Q56093]
 
−
** [http://www.uniprot.org/uniprot/Q42605 Q42605]
 
−
** [http://www.uniprot.org/uniprot/Q60109 Q60109]
 
−
** [http://www.uniprot.org/uniprot/P72903 P72903]
 
−
** [http://www.uniprot.org/uniprot/P72915 P72915]
 
−
** [http://www.uniprot.org/uniprot/O66256 O66256]
 
−
** [http://www.uniprot.org/uniprot/O64749 O64749]
 
−
** [http://www.uniprot.org/uniprot/Q9SN58 Q9SN58]
 
−
** [http://www.uniprot.org/uniprot/Q8VZ26 Q8VZ26]
 
−
** [http://www.uniprot.org/uniprot/Q43070 Q43070]
 
−
** [http://www.uniprot.org/uniprot/Q9T0A7 Q9T0A7]
 
−
** [http://www.uniprot.org/uniprot/O65780 O65780]
 
−
** [http://www.uniprot.org/uniprot/O65781 O65781]
 
−
** [http://www.uniprot.org/uniprot/Q9RMC0 Q9RMC0]
 
−
** [http://www.uniprot.org/uniprot/P04397 P04397]
 
−
** [http://www.uniprot.org/uniprot/P09147 P09147]
 
−
** [http://www.uniprot.org/uniprot/P13226 P13226]
 
−
** [http://www.uniprot.org/uniprot/P09609 P09609]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=udp-glucose 4-epimerase}}
 
−
{{#set: ec-number=ec-5.1.3.2}}
 
−
{{#set: nb gene associated=3}}
 
−
{{#set: nb pathway associated=8}}
 
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction TRANS-RXN0-623

  • direction:
    • left-to-right
  • common-name:
    • long-chain fatty acid-coa ligase
    • fatty acyl-coa synthetase (transporting)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR124064





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