Difference between revisions of "TRNA-CYTIDYLYLTRANSFERASE-RXN"

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(Created page with "Category:reaction == Reaction RXN1F-10 == * direction: ** left-to-right * common-name: ** protochlorophyllide oxidoreductase * ec-number: ** [http://enzyme.expasy.org/EC/1...")
(Created page with "Category:reaction == Reaction S-ADENMETSYN-RXN == * direction: ** left-to-right * common-name: ** methionine adenosyltransferase * ec-number: ** [http://enzyme.expasy.org/...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN1F-10 ==
+
== Reaction S-ADENMETSYN-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** protochlorophyllide oxidoreductase
+
** methionine adenosyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.3.1.33 ec-1.3.1.33]
+
** [http://enzyme.expasy.org/EC/2.5.1.6 ec-2.5.1.6]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Light]][c] '''+''' 1 [[MONO-VINYL-PROTOCHLOROPHYLLIDE-A]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CHLOROPHYLLIDE-A]][c] '''+''' 1 [[NADP]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[MET]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ12355]]
+
* Gene: [[SJ07891]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ09091]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[ETHYL-PWY]], ethene biosynthesis I (plants):
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[METHIONINE-DEG1-PWY]], L-methionine degradation I (to L-homocysteine):
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[SAM-PWY]], S-adenosyl-L-methionine biosynthesis:
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-5912]], 2'-deoxymugineic acid phytosiderophore biosynthesis:
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5041]], S-adenosyl-L-methionine salvage II:
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR101407
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11132 11132]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21081 21081]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03845 R03845]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00177 R00177]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q3J1A0 Q3J1A0]
+
** [http://www.uniprot.org/uniprot/P19358 P19358]
−
** [http://www.uniprot.org/uniprot/Q02432 Q02432]
+
** [http://www.uniprot.org/uniprot/P18298 P18298]
−
** [http://www.uniprot.org/uniprot/Q9RFD4 Q9RFD4]
+
** [http://www.uniprot.org/uniprot/Q91X83 Q91X83]
−
** [http://www.uniprot.org/uniprot/Q9Z5D9 Q9Z5D9]
+
** [http://www.uniprot.org/uniprot/Q9PNJ8 Q9PNJ8]
−
** [http://www.uniprot.org/uniprot/Q9RFD6 Q9RFD6]
+
** [http://www.uniprot.org/uniprot/P54419 P54419]
−
** [http://www.uniprot.org/uniprot/O66148 O66148]
+
** [http://www.uniprot.org/uniprot/P56460 P56460]
−
** [http://www.uniprot.org/uniprot/Q9ZGE9 Q9ZGE9]
+
** [http://www.uniprot.org/uniprot/Q9JVV6 Q9JVV6]
−
** [http://www.uniprot.org/uniprot/Q9ZGF0 Q9ZGF0]
+
** [http://www.uniprot.org/uniprot/Q9CEE0 Q9CEE0]
−
** [http://www.uniprot.org/uniprot/P21218 P21218]
+
** [http://www.uniprot.org/uniprot/O50163 O50163]
−
** [http://www.uniprot.org/uniprot/P41646 P41646]
+
** [http://www.uniprot.org/uniprot/P43762 P43762]
−
** [http://www.uniprot.org/uniprot/P56303 P56303]
+
** [http://www.uniprot.org/uniprot/P23686 P23686]
−
** [http://www.uniprot.org/uniprot/P56302 P56302]
+
** [http://www.uniprot.org/uniprot/P17562 P17562]
−
** [http://www.uniprot.org/uniprot/P48100 P48100]
+
** [http://www.uniprot.org/uniprot/Q7M4Y8 Q7M4Y8]
−
** [http://www.uniprot.org/uniprot/P48110 P48110]
+
** [http://www.uniprot.org/uniprot/Q9S992 Q9S992]
−
** [http://www.uniprot.org/uniprot/P48099 P48099]
+
** [http://www.uniprot.org/uniprot/Q90862 Q90862]
−
** [http://www.uniprot.org/uniprot/O48741 O48741]
+
** [http://www.uniprot.org/uniprot/P13444 P13444]
−
** [http://www.uniprot.org/uniprot/P73480 P73480]
+
** [http://www.uniprot.org/uniprot/P31153 P31153]
−
** [http://www.uniprot.org/uniprot/Q55607 Q55607]
+
** [http://www.uniprot.org/uniprot/Q00266 Q00266]
−
** [http://www.uniprot.org/uniprot/P51278 P51278]
+
** [http://www.uniprot.org/uniprot/P43281 P43281]
−
** [http://www.uniprot.org/uniprot/P51188 P51188]
+
** [http://www.uniprot.org/uniprot/P40320 P40320]
−
** [http://www.uniprot.org/uniprot/P51187 P51187]
+
** [http://www.uniprot.org/uniprot/P43280 P43280]
−
** [http://www.uniprot.org/uniprot/Q39617 Q39617]
+
** [http://www.uniprot.org/uniprot/P43282 P43282]
−
** [http://www.uniprot.org/uniprot/P56291 P56291]
+
** [http://www.uniprot.org/uniprot/P48498 P48498]
−
** [http://www.uniprot.org/uniprot/Q7M189 Q7M189]
+
** [http://www.uniprot.org/uniprot/P10659 P10659]
−
** [http://www.uniprot.org/uniprot/P36208 P36208]
+
** [http://www.uniprot.org/uniprot/Q39465 Q39465]
−
** [http://www.uniprot.org/uniprot/P36437 P36437]
+
** [http://www.uniprot.org/uniprot/P48466 P48466]
−
** [http://www.uniprot.org/uniprot/Q41578 Q41578]
+
** [http://www.uniprot.org/uniprot/P49612 P49612]
−
** [http://www.uniprot.org/uniprot/Q04607 Q04607]
+
** [http://www.uniprot.org/uniprot/P49613 P49613]
−
** [http://www.uniprot.org/uniprot/Q02431 Q02431]
+
** [http://www.uniprot.org/uniprot/P78003 P78003]
−
** [http://www.uniprot.org/uniprot/O22597 O22597]
+
** [http://www.uniprot.org/uniprot/Q49070 Q49070]
−
** [http://www.uniprot.org/uniprot/Q00864 Q00864]
+
** [http://www.uniprot.org/uniprot/P0A817 P0A817]
−
** [http://www.uniprot.org/uniprot/P29683 P29683]
+
** [http://www.uniprot.org/uniprot/P50299 P50299]
−
** [http://www.uniprot.org/uniprot/P26177 P26177]
+
** [http://www.uniprot.org/uniprot/O22350 O22350]
−
** [http://www.uniprot.org/uniprot/P26180 P26180]
+
** [http://www.uniprot.org/uniprot/P24260 P24260]
−
** [http://www.uniprot.org/uniprot/P17652 P17652]
+
** [http://www.uniprot.org/uniprot/O60198 O60198]
−
** [http://www.uniprot.org/uniprot/P15904 P15904]
+
** [http://www.uniprot.org/uniprot/Q12642 Q12642]
−
** [http://www.uniprot.org/uniprot/P13653 P13653]
 
−
** [http://www.uniprot.org/uniprot/P26156 P26156]
 
−
** [http://www.uniprot.org/uniprot/P28372 P28372]
 
−
** [http://www.uniprot.org/uniprot/Q41249 Q41249]
 
−
** [http://www.uniprot.org/uniprot/P26179 P26179]
 
−
** [http://www.uniprot.org/uniprot/P26163 P26163]
 
−
** [http://www.uniprot.org/uniprot/P26178 P26178]
 
−
** [http://www.uniprot.org/uniprot/P26164 P26164]
 
−
** [http://www.uniprot.org/uniprot/P26237 P26237]
 
−
** [http://www.uniprot.org/uniprot/P26238 P26238]
 
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=protochlorophyllide oxidoreductase}}
+
{{#set: common-name=methionine adenosyltransferase}}
−
{{#set: ec-number=ec-1.3.1.33}}
+
{{#set: ec-number=ec-2.5.1.6}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=5}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}

Revision as of 08:32, 15 March 2021

Reaction S-ADENMETSYN-RXN

  • direction:
    • left-to-right
  • common-name:
    • methionine adenosyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • ETHYL-PWY, ethene biosynthesis I (plants):
    • 3 reactions found over 3 reactions in the full pathway
  • METHIONINE-DEG1-PWY, L-methionine degradation I (to L-homocysteine):
    • 2 reactions found over 3 reactions in the full pathway
  • SAM-PWY, S-adenosyl-L-methionine biosynthesis:
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-5912, 2'-deoxymugineic acid phytosiderophore biosynthesis:
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-5041, S-adenosyl-L-methionine salvage II:
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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