Difference between revisions of "TRNA-adenine-37"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRNUTRANSHYDROGEN-RXN PYRNUTRANSHYDROGEN-RXN] == * direction: ** left-to-right * common-name: ** n...")
(Created page with "Category:gene == Gene SJ09066 == * transcription-direction: ** positive * right-end-position: ** 39491 * left-end-position: ** 21465 * centisome-position: ** 47.087856...")
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRNUTRANSHYDROGEN-RXN PYRNUTRANSHYDROGEN-RXN] ==
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== Gene SJ09066 ==
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* direction:
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* transcription-direction:
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** left-to-right
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** positive
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* common-name:
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* right-end-position:
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** nad(p)+ transhydrogenase (ab-specific)
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** 39491
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** pyridine nucleotide transhydrogenase
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* left-end-position:
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* ec-number:
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** 21465
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** [http://enzyme.expasy.org/EC/1.6.1.2 ec-1.6.1.2]
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* centisome-position:
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** [http://enzyme.expasy.org/EC/1.6.1.3 ec-1.6.1.3]
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** 47.087856   
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** [http://enzyme.expasy.org/EC/1.6.1.1 ec-1.6.1.1]
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== Organism(s) associated with this gene  ==
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== Reaction formula ==
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* [[S.japonica_carotenoid_curated]]
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* 1 [[NAD]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[NADH]][c] '''+''' 1 [[NADP]][c]
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== Reaction(s) associated ==
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== Gene(s) associated with this reaction  ==
 
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* Gene: [[SJ20208]]
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* [[ATPASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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* [[DNA-DIRECTED-DNA-POLYMERASE-RXN]]
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ03777]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ03718]]
 
−
** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ20207]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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* Gene: [[SJ20209]]
 
−
** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ03778]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[SJ13593]]
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* [[RXN-12195]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
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* [[RXN-12196]]
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ10661]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
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* [[RXN0-5462]]
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ08849]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
</div>
 
</div>
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== Pathway(s) ==
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== Pathway(s) associated ==
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* [[PWY-5083]], NAD/NADH phosphorylation and dephosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5083 PWY-5083]
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* [[PWY-7210]]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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** '''8''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* [[PWY-7198]]
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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* [[PWY-7184]]
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** '''9''' reactions found over '''9''' reactions in the full pathway
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== External links  ==
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* [[PWY-6545]]
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* RHEA:
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** '''8''' reactions found over '''9''' reactions in the full pathway
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11692 11692]
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{{#set: transcription-direction=positive}}
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* LIGAND-RXN:
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{{#set: right-end-position=39491}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00112 R00112]
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{{#set: left-end-position=21465}}
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* UNIPROT:
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{{#set: centisome-position=47.087856    }}
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** [http://www.uniprot.org/uniprot/Q9JUR5 Q9JUR5]
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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** [http://www.uniprot.org/uniprot/Q9JUR3 Q9JUR3]
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{{#set: nb reaction associated=6}}
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** [http://www.uniprot.org/uniprot/P11024 P11024]
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{{#set: nb pathway associated=4}}
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** [http://www.uniprot.org/uniprot/P07001 P07001]
 
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** [http://www.uniprot.org/uniprot/P0AB67 P0AB67]
 
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** [http://www.uniprot.org/uniprot/P43842 P43842]
 
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** [http://www.uniprot.org/uniprot/P43010 P43010]
 
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** [http://www.uniprot.org/uniprot/Q61941 Q61941]
 
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** [http://www.uniprot.org/uniprot/P73500 P73500]
 
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** [http://www.uniprot.org/uniprot/P73496 P73496]
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=nad(p)+ transhydrogenase (ab-specific)|pyridine nucleotide transhydrogenase}}
 
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{{#set: ec-number=ec-1.6.1.2|ec-1.6.1.3|ec-1.6.1.1}}
 
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{{#set: nb gene associated=9}}
 
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{{#set: nb pathway associated=1}}
 
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{{#set: reconstruction category=orthology|annotation}}
 
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{{#set: reconstruction tool=pantograph|pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Revision as of 09:28, 27 August 2019

Gene SJ09066

  • transcription-direction:
    • positive
  • right-end-position:
    • 39491
  • left-end-position:
    • 21465
  • centisome-position:
    • 47.087856

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7210
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-7198
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7184
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-6545
    • 8 reactions found over 9 reactions in the full pathway




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