Difference between revisions of "TRNA-pseudouridine-38-40"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13162 RXN-13162] == * direction: ** left-to-right * common-name: ** squalene synthase ** farnes...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8322 RXN-8322] == * direction: ** left-to-right * common-name: ** 1-18:1-2-18:2-phosphatidylcho...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13162 RXN-13162] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8322 RXN-8322] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** squalene synthase
+
** 1-18:1-2-18:2-phosphatidylcholine 1-12-desaturase
−
** farnesyl-diphosphate farnesyltransferase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.5.1.21 ec-2.5.1.21]
+
** [http://enzyme.expasy.org/EC/1.14.19.22 ec-1.14.19.22]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 2 [[FARNESYL-PP]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NAD-P-OR-NOP]][c] '''+''' 2 [[PPI]][c] '''+''' 1 [[SQUALENE]][c]
+
* 1 [[CPD-8091]][c] '''+''' 2 [[FERROCYTOCHROME-B5]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[CPD-2182]][c] '''+''' 2 [[FERRICYTOCHROME-B5]][c] '''+''' 2 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ13532]]
+
* Gene: [[SJ00667]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ02885]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5670]], epoxysqualene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5670 PWY-5670]
+
* [[PWY-762]], phospholipid desaturation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-762 PWY-762]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''19''' reactions found over '''21''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R06223 R06223]
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32302 32302]
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32296 32296]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=farnesyl-diphosphate farnesyltransferase|squalene synthase}}
+
{{#set: common-name=1-18:1-2-18:2-phosphatidylcholine 1-12-desaturase}}
−
{{#set: ec-number=ec-2.5.1.21}}
+
{{#set: ec-number=ec-1.14.19.22}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 14:25, 26 August 2019

Reaction RXN-8322

  • direction:
    • left-to-right
  • common-name:
    • 1-18:1-2-18:2-phosphatidylcholine 1-12-desaturase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-762, phospholipid desaturation: PWY-762
    • 19 reactions found over 21 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=TRNA-pseudouridine-38-40&oldid=22179"