Difference between revisions of "TRNA-uridines"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROSTAGLANDIN-E-SYNTHASE-RXN PROSTAGLANDIN-E-SYNTHASE-RXN] == * direction: ** left-to-right * commo...")
(Created page with "Category:metabolite == Metabolite CPD-15035 == * common-name: ** 4-deoxy-β-d-gluc-4-enuronosyl-2-sulfate-(1,3)-n-acetyl-β-d-galactosamine * smiles: ** cc(=o)nc2(...")
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[[Category:reaction]]
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[[Category:metabolite]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROSTAGLANDIN-E-SYNTHASE-RXN PROSTAGLANDIN-E-SYNTHASE-RXN] ==
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== Metabolite CPD-15035 ==
* direction:
 
** left-to-right
 
 
* common-name:
 
* common-name:
** prostaglandin e synthase
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** 4-deoxy-β-d-gluc-4-enuronosyl-2-sulfate-(1,3)-n-acetyl-β-d-galactosamine
* ec-number:
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* smiles:
** [http://enzyme.expasy.org/EC/5.3.99.3 ec-5.3.99.3]
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** cc(=o)nc2(c(oc1(oc(c(=o)[o-])=cc(o)c(os([o-])(=o)=o)1))c(o)c(co)oc(o)2)
== Reaction formula ==
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* inchi-key:
* 1 [[PROSTAGLANDIN-H2]][c] '''=>''' 1 [[5Z13E-15S-1115-DIHYDROXY-9-OXOPROS]][c]
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** zeucjyoqjtzlfj-rbcdgzsosa-l
== Gene(s) associated with this reaction  ==
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* molecular-weight:
* Gene: [[SJ21474]]
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** 457.362
** Category: [[annotation]]
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== Reaction(s) known to consume the compound ==
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [[RXN-14021]]
== Pathway(s) ==
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== Reaction(s) known to produce the compound ==
* [[PWY66-374]], C20 prostanoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-374 PWY66-374]
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== Reaction(s) of unknown directionality ==
** '''2''' reactions found over '''5''' reactions in the full pathway
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{{#set: common-name=4-deoxy-β-d-gluc-4-enuronosyl-2-sulfate-(1,3)-n-acetyl-β-d-galactosamine}}
== Reconstruction information  ==
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{{#set: inchi-key=inchikey=zeucjyoqjtzlfj-rbcdgzsosa-l}}
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: molecular-weight=457.362}}
== External links  ==
 
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12894 12894]
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R02265 R02265]
 
{{#set: direction=left-to-right}}
 
{{#set: common-name=prostaglandin e synthase}}
 
{{#set: ec-number=ec-5.3.99.3}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}
 

Revision as of 20:37, 18 December 2020

Metabolite CPD-15035

  • common-name:
    • 4-deoxy-β-d-gluc-4-enuronosyl-2-sulfate-(1,3)-n-acetyl-β-d-galactosamine
  • smiles:
    • cc(=o)nc2(c(oc1(oc(c(=o)[o-])=cc(o)c(os([o-])(=o)=o)1))c(o)c(co)oc(o)2)
  • inchi-key:
    • zeucjyoqjtzlfj-rbcdgzsosa-l
  • molecular-weight:
    • 457.362

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality