Difference between revisions of "TRNA-with-5-taurinomethyl-2-thiouridine"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:gene == Gene SJ05644 == * transcription-direction: ** positive * right-end-position: ** 54943 * left-end-position: ** 39039 * centisome-position: ** 43.445213...")
 
(Created page with "Category:gene == Gene SJ19104 == * transcription-direction: ** positive * right-end-position: ** 426131 * left-end-position: ** 402172 * centisome-position: ** 35.252983...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ05644 ==
+
== Gene SJ19104 ==
 
* transcription-direction:
 
* transcription-direction:
 
** positive
 
** positive
 
* right-end-position:
 
* right-end-position:
−
** 54943
+
** 426131
 
* left-end-position:
 
* left-end-position:
−
** 39039
+
** 402172
 
* centisome-position:
 
* centisome-position:
−
** 43.445213    
+
** 35.252983    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[ALCD19]]
+
* [[3.1.1.64-RXN]]
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* [[ALCDH_LPAREN_nadp_RPAREN_hi]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* [[ALCDH_LPAREN_nadp_RPAREN_i]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* [[ALCOHOL-DEHYDROGENASE-NADP+-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[ALCOHOL-DEHYDROGENASE-NADPORNOP+-RXN]]
+
* [[CARBOXYLESTERASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[ALDEHYDE-REDUCTASE-RXN]]
+
* [[RETINYL-PALMITATE-ESTERASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[GLUCURONATE-REDUCTASE-RXN]]
+
* [[RXN-10711]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[GLYCEROL-DEHYDROGENASE-NADP+-RXN]]
+
* [[RXN-10767]]
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-10717]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-12078]]
+
* [[RXN-12252]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-12484]]
+
* [[RXN-12575]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-14023]]
+
* [[RXN-9733]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-14102]]
+
* [[RXNQT-4366]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-8772]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-8773]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
</div>
 
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY-5525]]
+
* [[PWY-6303]]
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY3DJ-35471]]
+
* [[PWY-6857]]
−
** '''3''' reactions found over '''6''' reactions in the full pathway
+
** '''3''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-6307]]
+
* [[PWY-6041]]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6693]]
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7178]]
 
 
** '''1''' reactions found over '''4''' reactions in the full pathway
 
** '''1''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-5515]]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-5516]]
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
 
{{#set: transcription-direction=positive}}
 
{{#set: transcription-direction=positive}}
−
{{#set: right-end-position=54943}}
+
{{#set: right-end-position=426131}}
−
{{#set: left-end-position=39039}}
+
{{#set: left-end-position=402172}}
−
{{#set: centisome-position=43.445213   }}
+
{{#set: centisome-position=35.252983   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=15}}
+
{{#set: nb reaction associated=9}}
−
{{#set: nb pathway associated=7}}
+
{{#set: nb pathway associated=3}}

Revision as of 14:24, 26 August 2019

Gene SJ19104

  • transcription-direction:
    • positive
  • right-end-position:
    • 426131
  • left-end-position:
    • 402172
  • centisome-position:
    • 35.252983

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6303
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-6857
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-6041
    • 1 reactions found over 4 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=TRNA-with-5-taurinomethyl-2-thiouridine&oldid=21113"