|
|
| (9 intermediate revisions by 5 users not shown) |
| Line 1: |
Line 1: |
| − | [[Category:reaction]] | + | [[Category:metabolite]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRANSALDOL-RXN TRANSALDOL-RXN] == | + | == Metabolite tRNAPhe-wybutosine == |
| − | * direction:
| |
| − | ** reversible
| |
| | * common-name: | | * common-name: |
| − | ** transaldolase | + | ** wybutosine37 in trnaphe |
| − | * ec-number:
| + | == Reaction(s) known to consume the compound == |
| − | ** [http://enzyme.expasy.org/EC/2.2.1.2 ec-2.2.1.2]
| + | == Reaction(s) known to produce the compound == |
| − | == Reaction formula == | + | * [[RXN-14520]] |
| − | * 1 [[D-SEDOHEPTULOSE-7-P]][c] '''+''' 1 [[GAP]][c] '''<=>''' 1 [[ERYTHROSE-4P]][c] '''+''' 1 [[FRUCTOSE-6P]][c]
| + | == Reaction(s) of unknown directionality == |
| − | == Gene(s) associated with this reaction ==
| + | {{#set: common-name=wybutosine37 in trnaphe}} |
| − | * Gene: [[SJ12204]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ18265]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | == Pathway(s) == | |
| − | * [[PWY-1861]], formaldehyde assimilation II (assimilatory RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861] | |
| − | ** '''7''' reactions found over '''9''' reactions in the full pathway
| |
| − | * [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
| |
| − | ** '''12''' reactions found over '''15''' reactions in the full pathway
| |
| − | * [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
| |
| − | ** '''11''' reactions found over '''12''' reactions in the full pathway
| |
| − | * [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY]
| |
| − | ** '''5''' reactions found over '''5''' reactions in the full pathway
| |
| − | * [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
| |
| − | ** '''10''' reactions found over '''10''' reactions in the full pathway
| |
| − | == Reconstruction information ==
| |
| − | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
| |
| − | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
| |
| − | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
| |
| − | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
| |
| − | == External links ==
| |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| |
| − | * RHEA:
| |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17056 17056]
| |
| − | * LIGAND-RXN:
| |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R01827 R01827]
| |
| − | * UNIPROT:
| |
| − | ** [http://www.uniprot.org/uniprot/P17441 P17441]
| |
| − | ** [http://www.uniprot.org/uniprot/P17440 P17440]
| |
| − | ** [http://www.uniprot.org/uniprot/P37837 P37837]
| |
| − | ** [http://www.uniprot.org/uniprot/P45055 P45055]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9JSU1 Q9JSU1]
| |
| − | ** [http://www.uniprot.org/uniprot/P0A867 P0A867]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9PIL5 Q9PIL5]
| |
| − | ** [http://www.uniprot.org/uniprot/Q58370 Q58370]
| |
| − | ** [http://www.uniprot.org/uniprot/P34214 P34214]
| |
| − | ** [http://www.uniprot.org/uniprot/P0A870 P0A870]
| |
| − | ** [http://www.uniprot.org/uniprot/P15019 P15019]
| |
| − | ** [http://www.uniprot.org/uniprot/P53228 P53228]
| |
| − | ** [http://www.uniprot.org/uniprot/P51778 P51778]
| |
| − | ** [http://www.uniprot.org/uniprot/P72797 P72797]
| |
| − | ** [http://www.uniprot.org/uniprot/O04894 O04894]
| |
| − | ** [http://www.uniprot.org/uniprot/P78865 P78865]
| |
| − | </div>
| |
| − | {{#set: direction=reversible}}
| |
| − | {{#set: common-name=transaldolase}} | |
| − | {{#set: ec-number=ec-2.2.1.2}}
| |
| − | {{#set: nb gene associated=2}}
| |
| − | {{#set: nb pathway associated=5}}
| |
| − | {{#set: reconstruction category=orthology|annotation}}
| |
| − | {{#set: reconstruction tool=pathwaytools|pantograph}}
| |
| − | {{#set: reconstruction comment=n.a}}
| |
| − | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}
| |
