Difference between revisions of "TRNAPhe-wybutosine"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8668 RXN-8668] == * direction: ** left-to-right * common-name: ** protein-methionine-s-oxide re...")
(Created page with "Category:metabolite == Metabolite CPD-207 == * common-name: ** phenylacetyl-coa * smiles: ** cc(c)(c(o)c(=o)nccc(=o)nccsc(=o)cc1(c=cc=cc=1))cop(=o)(op(=o)(occ2(c(op([o-])(...")
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[[Category:reaction]]
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[[Category:metabolite]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8668 RXN-8668] ==
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== Metabolite CPD-207 ==
* direction:
 
** left-to-right
 
 
* common-name:
 
* common-name:
** protein-methionine-s-oxide reductase
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** phenylacetyl-coa
** peptide-methionine (s)-s-oxide reductase
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* smiles:
* ec-number:
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** cc(c)(c(o)c(=o)nccc(=o)nccsc(=o)cc1(c=cc=cc=1))cop(=o)(op(=o)(occ2(c(op([o-])(=o)[o-])c(o)c(o2)n4(c3(=c(c(n)=nc=n3)n=c4))))[o-])[o-]
** [http://enzyme.expasy.org/EC/1.8.4.11 ec-1.8.4.11]
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* inchi-key:
== Reaction formula ==
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** zigifdrjfzyeeq-cecatxlmsa-j
* 1 [[Protein-L-methionine-S-S-oxides]][c] '''+''' 1 [[Red-Thioredoxin]][c] '''=>''' 1 [[Ox-Thioredoxin]][c] '''+''' 1 [[Protein-L-methionine]][c] '''+''' 1 [[WATER]][c]
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* molecular-weight:
== Gene(s) associated with this reaction  ==
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** 881.637
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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== Reaction(s) known to consume the compound ==
* Gene: [[SJ18862]]
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* [[RXN-10821]]
** Category: [[annotation]]
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== Reaction(s) known to produce the compound ==
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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== Reaction(s) of unknown directionality ==
* Gene: [[SJ15414]]
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{{#set: common-name=phenylacetyl-coa}}
** Category: [[annotation]]
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{{#set: inchi-key=inchikey=zigifdrjfzyeeq-cecatxlmsa-j}}
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: molecular-weight=881.637}}
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ13438]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ17262]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ20421]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ17035]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ03909]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ17041]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
</div>
 
== Pathway(s) ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14219 14219]
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R04120 R04120]
 
{{#set: direction=left-to-right}}
 
{{#set: common-name=peptide-methionine (s)-s-oxide reductase|protein-methionine-s-oxide reductase}}
 
{{#set: ec-number=ec-1.8.4.11}}
 
{{#set: nb gene associated=8}}
 
{{#set: nb pathway associated=0}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
 

Revision as of 20:38, 18 December 2020

Metabolite CPD-207

  • common-name:
    • phenylacetyl-coa
  • smiles:
    • cc(c)(c(o)c(=o)nccc(=o)nccsc(=o)cc1(c=cc=cc=1))cop(=o)(op(=o)(occ2(c(op([o-])(=o)[o-])c(o)c(o2)n4(c3(=c(c(n)=nc=n3)n=c4))))[o-])[o-]
  • inchi-key:
    • zigifdrjfzyeeq-cecatxlmsa-j
  • molecular-weight:
    • 881.637

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality