Difference between revisions of "TRNAs-with-queuine"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12710 RXN-12710] == * direction: ** left-to-right * common-name: ** 3-oxoacyl coa thiolase ** a...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=IMDHT_LPAREN_3c2hmp_RPAREN_ IMDHT_LPAREN_3c2hmp_RPAREN_] == * direction: ** reversible * common-nam...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12710 RXN-12710] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=IMDHT_LPAREN_3c2hmp_RPAREN_ IMDHT_LPAREN_3c2hmp_RPAREN_] ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** 3-oxoacyl coa thiolase
+
** 3-isopropylmalate dehydratase, 3-carboxy-2-hydroxy-4-methylpentanoate forming
−
** acetyl-coa c-acyltransferase
 
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/2.3.1.16 ec-2.3.1.16]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CO-A]][c] '''+''' 1 [[CPD-13699]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[CPD-13700]][c]
+
* 1.0 [[CPD-9451]][c] '''+''' 1.0 [[WATER]][c] '''<=>''' 1.0 [[2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ16470]]
+
* Gene: [[SJ09771]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ21817]]
+
* Gene: [[SJ22396]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ14898]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ21818]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ09371]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6945]], cholesterol degradation to androstenedione I (cholesterol oxidase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6945 PWY-6945]
 
−
** '''5''' reactions found over '''17''' reactions in the full pathway
 
−
* [[PWY-6946]], cholesterol degradation to androstenedione II (cholesterol dehydrogenase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6946 PWY-6946]
 
−
** '''6''' reactions found over '''22''' reactions in the full pathway
 
−
* [[PWY-6948]], sitosterol degradation to androstenedione: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6948 PWY-6948]
 
−
** '''2''' reactions found over '''18''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: common-name=3-oxoacyl coa thiolase|acetyl-coa c-acyltransferase}}
+
{{#set: common-name=3-isopropylmalate dehydratase, 3-carboxy-2-hydroxy-4-methylpentanoate forming}}
−
{{#set: ec-number=ec-2.3.1.16}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb gene associated=5}}
+
{{#set: nb pathway associated=0}}
−
{{#set: nb pathway associated=3}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction tool=pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}

Revision as of 09:29, 27 August 2019

Reaction IMDHT_LPAREN_3c2hmp_RPAREN_

  • direction:
    • reversible
  • common-name:
    • 3-isopropylmalate dehydratase, 3-carboxy-2-hydroxy-4-methylpentanoate forming

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

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