Difference between revisions of "TTP"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRUVDEH-RXN PYRUVDEH-RXN] == * direction: ** left-to-right * common-name: ** pyruvate dehydrogenas...")
(Created page with "Category:metabolite == Metabolite CPD1G-332 == * common-name: ** 2-carboxy-cerotoyl-coa * smiles: ** ccccccccccccccccccccccccc(c([o-])=o)c(sccnc(=o)ccnc(=o)c(o)c(c)(c)cop(...")
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[[Category:reaction]]
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[[Category:metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRUVDEH-RXN PYRUVDEH-RXN] ==
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== Metabolite CPD1G-332 ==
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* direction:
 
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** left-to-right
 
 
* common-name:
 
* common-name:
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** pyruvate dehydrogenase (nad+)
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** 2-carboxy-cerotoyl-coa
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* ec-number:
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* smiles:
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** [http://enzyme.expasy.org/EC/1.2.1 ec-1.2.1]
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** ccccccccccccccccccccccccc(c([o-])=o)c(sccnc(=o)ccnc(=o)c(o)c(c)(c)cop(=o)(op(=o)(occ1(c(op([o-])(=o)[o-])c(o)c(o1)n3(c2(=c(c(n)=nc=n2)n=c3))))[o-])[o-])=o
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== Reaction formula ==
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* inchi-key:
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* 1 [[CO-A]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[PYRUVATE]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH]][c]
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** vuydekmwdhlssi-rvnpwdolsa-i
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== Gene(s) associated with this reaction  ==
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* molecular-weight:
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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** 1185.185
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* Gene: [[SJ06474]]
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== Reaction(s) known to consume the compound ==
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** Category: [[orthology]]
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== Reaction(s) known to produce the compound ==
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* [[RXN1G-4355]]
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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== Reaction(s) of unknown directionality ==
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: common-name=2-carboxy-cerotoyl-coa}}
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* Gene: [[SJ10087]]
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{{#set: inchi-key=inchikey=vuydekmwdhlssi-rvnpwdolsa-i}}
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** Category: [[orthology]]
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{{#set: molecular-weight=1185.185}}
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ10725]]
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ00971]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ01042]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[SJ19470]]
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ13629]]
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ09312]]
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ14925]]
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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</div>
 
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== Pathway(s) ==
 
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* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7384 PWY-7384]
 
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** '''6''' reactions found over '''10''' reactions in the full pathway
 
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* [[GLYCOLYSIS-TCA-GLYOX-BYPASS]], superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass: [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS-TCA-GLYOX-BYPASS GLYCOLYSIS-TCA-GLYOX-BYPASS]
 
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** '''3''' reactions found over '''1''' reactions in the full pathway
 
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* [[PWY-7218]], photosynthetic 3-hydroxybutanoate biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7218 PWY-7218]
 
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** '''7''' reactions found over '''4''' reactions in the full pathway
 
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* [[PWY-5482]], pyruvate fermentation to acetate II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5482 PWY-5482]
 
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** '''2''' reactions found over '''3''' reactions in the full pathway
 
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* [[PWY-5537]], pyruvate fermentation to acetate V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5537 PWY-5537]
 
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** '''2''' reactions found over '''2''' reactions in the full pathway
 
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* [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6886 PWY-6886]
 
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** '''8''' reactions found over '''5''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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== External links  ==
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28042 28042]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R00209 R00209]
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=pyruvate dehydrogenase (nad+)}}
 
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{{#set: ec-number=ec-1.2.1}}
 
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{{#set: nb gene associated=9}}
 
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{{#set: nb pathway associated=6}}
 
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{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=pantograph|pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}
 

Revision as of 20:37, 18 December 2020

Metabolite CPD1G-332

  • common-name:
    • 2-carboxy-cerotoyl-coa
  • smiles:
    • ccccccccccccccccccccccccc(c([o-])=o)c(sccnc(=o)ccnc(=o)c(o)c(c)(c)cop(=o)(op(=o)(occ1(c(op([o-])(=o)[o-])c(o)c(o1)n3(c2(=c(c(n)=nc=n2)n=c3))))[o-])[o-])=o
  • inchi-key:
    • vuydekmwdhlssi-rvnpwdolsa-i
  • molecular-weight:
    • 1185.185

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=TTP&oldid=48240"