Difference between revisions of "TUM1-L-cysteine"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:gene == Gene SJ20726 == * transcription-direction: ** negative * right-end-position: ** 68386 * left-end-position: ** 52439 * centisome-position: ** 25.668776...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8642 RXN-8642] == <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overfl...")
Line 1: Line 1:
−
[[Category:gene]]
+
[[Category:reaction]]
−
== Gene SJ20726 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8642 RXN-8642] ==
−
* transcription-direction:
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** negative
+
* direction:
−
* right-end-position:
+
** reversible
−
** 68386
+
* common-name:
−
* left-end-position:
+
** nadp-dependent isocitrate dehydrogenase
−
** 52439
+
* synonymous:
−
* centisome-position:
+
** isocitrate dehydrogenase (nadp-dependent)
−
** 25.668776   
+
** nadp+-linked isocitrate dehydrogenase
−
== Organism(s) associated with this gene  ==
+
** oxalsuccinic decarboxylase
−
* [[S.japonica_carotenoid_curated]]
+
** idh (ambiguous)
−
== Reaction(s) associated ==
+
** nadp+-icdh
−
* [[3.4.24.56-RXN]]
+
** nadp isocitric dehydrogenase
 +
** nadp+-idh
 +
** idp2
 +
** idp1
 +
** isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
 +
** dual-cofactor-specific isocitrate dehydrogenase
 +
** nadp-dependent isocitric dehydrogenase
 +
** nadp-linked isocitrate dehydrogenase
 +
** idp
 +
** nadp-specific isocitrate dehydrogenase
 +
** idp3
 +
** triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
 +
** isocitrate (nadp) dehydrogenase
 +
</div>
 +
== Reaction formula ==
 +
* 1 [[OXALO-SUCCINATE]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 +
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ08749]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* [[ATPASE-RXN]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
== Pathway(s)  ==
−
* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
+
== Reconstruction information  ==
−
** Category: [[annotation]]
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-12195]]
+
== External links  ==
−
** Category: [[annotation]]
+
* RHEA:
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19384 19384]
−
* [[RXN-12196]]
+
* LIGAND-RXN:
−
** Category: [[annotation]]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00268 R00268]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
{{#set: direction=reversible}}
−
* [[RXN0-5462]]
+
{{#set: common-name=nadp-dependent isocitrate dehydrogenase}}
−
** Category: [[annotation]]
+
{{#set: synonymous=nadp+-icdh|nadp-linked isocitrate dehydrogenase|idp3|nadp+-idh|oxalsuccinic decarboxylase|idp|nadp isocitric dehydrogenase|idp1|idp2|isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase|dual-cofactor-specific isocitrate dehydrogenase|nadp+-linked isocitrate dehydrogenase|isocitrate dehydrogenase (nadp-dependent)|nadp-dependent isocitric dehydrogenase|triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase|idh (ambiguous)|isocitrate (nadp) dehydrogenase|nadp-specific isocitrate dehydrogenase}}
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
{{#set: nb gene associated=1}}
−
== Pathway(s) associated ==
+
{{#set: nb pathway associated=0}}
−
* [[PWY-7210]]
+
{{#set: reconstruction category=orthology|annotation}}
−
** '''8''' reactions found over '''8''' reactions in the full pathway
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
* [[PWY-7198]]
+
{{#set: reconstruction comment=n.a}}
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
−
* [[PWY-7184]]
 
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6545]]
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
{{#set: transcription-direction=negative}}
 
−
{{#set: right-end-position=68386}}
 
−
{{#set: left-end-position=52439}}
 
−
{{#set: centisome-position=25.668776    }}
 
−
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
−
{{#set: nb reaction associated=6}}
 
−
{{#set: nb pathway associated=4}}
 

Revision as of 14:24, 26 August 2019

Reaction RXN-8642

  • direction:
    • reversible
  • common-name:
    • nadp-dependent isocitrate dehydrogenase
  • synonymous:
    • isocitrate dehydrogenase (nadp-dependent)
    • nadp+-linked isocitrate dehydrogenase
    • oxalsuccinic decarboxylase
    • idh (ambiguous)
    • nadp+-icdh
    • nadp isocitric dehydrogenase
    • nadp+-idh
    • idp2
    • idp1
    • isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
    • dual-cofactor-specific isocitrate dehydrogenase
    • nadp-dependent isocitric dehydrogenase
    • nadp-linked isocitrate dehydrogenase
    • idp
    • nadp-specific isocitrate dehydrogenase
    • idp3
    • triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
    • isocitrate (nadp) dehydrogenase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=TUM1-L-cysteine&oldid=21265"