Difference between revisions of "TUM1-L-cysteine"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8642 RXN-8642] == <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overfl...")
(Created page with "Category:gene == Gene SJ22007 == * transcription-direction: ** negative * right-end-position: ** 29214 * left-end-position: ** 25595 * centisome-position: ** 14.043279...")
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8642 RXN-8642] ==
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== Gene SJ22007 ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* transcription-direction:
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* direction:
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** negative
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** reversible
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* right-end-position:
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* common-name:
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** 29214
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** nadp-dependent isocitrate dehydrogenase
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* left-end-position:
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* synonymous:
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** 25595
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** isocitrate dehydrogenase (nadp-dependent)
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* centisome-position:
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** nadp+-linked isocitrate dehydrogenase
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** 14.043279   
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** oxalsuccinic decarboxylase
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== Organism(s) associated with this gene  ==
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** idh (ambiguous)
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* [[S.japonica_carotenoid_curated]]
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** nadp+-icdh
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== Reaction(s) associated ==
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** nadp isocitric dehydrogenase
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* [[GUANIDINOACETATE-N-METHYLTRANSFERASE-RXN]]
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** nadp+-idh
 
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** idp2
 
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** idp1
 
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** isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
 
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** dual-cofactor-specific isocitrate dehydrogenase
 
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** nadp-dependent isocitric dehydrogenase
 
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** nadp-linked isocitrate dehydrogenase
 
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** idp
 
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** nadp-specific isocitrate dehydrogenase
 
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** idp3
 
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** triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
 
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** isocitrate (nadp) dehydrogenase
 
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</div>
 
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== Reaction formula ==
 
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* 1 [[OXALO-SUCCINATE]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
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== Gene(s) associated with this reaction  ==
 
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* Gene: [[SJ08749]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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== Pathway(s) associated ==
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* [[GLYCGREAT-PWY]]
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== Pathway(s) ==
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** '''1''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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{{#set: transcription-direction=negative}}
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: right-end-position=29214}}
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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{{#set: left-end-position=25595}}
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== External links  ==
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{{#set: centisome-position=14.043279    }}
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* RHEA:
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19384 19384]
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{{#set: nb reaction associated=1}}
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* LIGAND-RXN:
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{{#set: nb pathway associated=1}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00268 R00268]
 
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{{#set: direction=reversible}}
 
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{{#set: common-name=nadp-dependent isocitrate dehydrogenase}}
 
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{{#set: synonymous=nadp+-icdh|nadp-linked isocitrate dehydrogenase|idp3|nadp+-idh|oxalsuccinic decarboxylase|idp|nadp isocitric dehydrogenase|idp1|idp2|isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase|dual-cofactor-specific isocitrate dehydrogenase|nadp+-linked isocitrate dehydrogenase|isocitrate dehydrogenase (nadp-dependent)|nadp-dependent isocitric dehydrogenase|triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase|idh (ambiguous)|isocitrate (nadp) dehydrogenase|nadp-specific isocitrate dehydrogenase}}
 
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{{#set: nb gene associated=1}}
 
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{{#set: nb pathway associated=0}}
 
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{{#set: reconstruction category=orthology|annotation}}
 
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{{#set: reconstruction tool=pantograph|pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Revision as of 09:28, 27 August 2019

Gene SJ22007

  • transcription-direction:
    • negative
  • right-end-position:
    • 29214
  • left-end-position:
    • 25595
  • centisome-position:
    • 14.043279

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • GLYCGREAT-PWY
    • 1 reactions found over 2 reactions in the full pathway




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