Difference between revisions of "TYROSINE-DECARBOXYLASE-RXN"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6303 PWY-6303] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-3193 tax-31...")
(Created page with "Category:reaction == Reaction RIB5PISOM-RXN == * direction: ** reversible * common-name: ** ribose-5-phosphate isomerase * ec-number: ** [http://enzyme.expasy.org/EC/5.3.1...")
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6303 PWY-6303] ==
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== Reaction RIB5PISOM-RXN ==
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* taxonomic-range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-3193 tax-3193]
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** reversible
 
* common-name:
 
* common-name:
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** methyl indole-3-acetate interconversion
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** ribose-5-phosphate isomerase
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== Reaction(s) found ==
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* ec-number:
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* [[RXN-10711]]
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** [http://enzyme.expasy.org/EC/5.3.1.6 ec-5.3.1.6]
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== Reaction(s) not found ==
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== Reaction formula ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9825 RXN-9825]
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* 1 [[RIBOSE-5P]][c] '''<=>''' 1 [[RIBULOSE-5P]][c]
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{{#set: taxonomic-range=tax-3193}}
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== Gene(s) associated with this reaction  ==
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{{#set: common-name=methyl indole-3-acetate interconversion}}
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* Gene: [[SJ00411]]
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{{#set: nb reaction found=1}}
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** Category: [[annotation]]
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{{#set: completion rate=0.5}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: nb total reaction=2}}
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** Category: [[orthology]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ07743]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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== Pathway(s) ==
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* [[P124-PWY]], Bifidobacterium shunt:
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** '''12''' reactions found over '''15''' reactions in the full pathway
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* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle):
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** '''11''' reactions found over '''12''' reactions in the full pathway
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* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch):
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-5723]], Rubisco shunt:
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** '''10''' reactions found over '''10''' reactions in the full pathway
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* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle:
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** '''12''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-1861]], formaldehyde assimilation II (assimilatory RuMP Cycle):
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** '''7''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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== External links  ==
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14660 14660]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R01056 R01056]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P0A7Z0 P0A7Z0]
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** [http://www.uniprot.org/uniprot/Q9CDI7 Q9CDI7]
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** [http://www.uniprot.org/uniprot/P44725 P44725]
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** [http://www.uniprot.org/uniprot/Q58998 Q58998]
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** [http://www.uniprot.org/uniprot/Q9JTM5 Q9JTM5]
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** [http://www.uniprot.org/uniprot/Q9PP08 Q9PP08]
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** [http://www.uniprot.org/uniprot/P37351 P37351]
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** [http://www.uniprot.org/uniprot/P74234 P74234]
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** [http://www.uniprot.org/uniprot/Q55766 Q55766]
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{{#set: direction=reversible}}
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{{#set: common-name=ribose-5-phosphate isomerase}}
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{{#set: ec-number=ec-5.3.1.6}}
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{{#set: nb gene associated=2}}
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{{#set: nb pathway associated=6}}
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{{#set: reconstruction category=annotation|orthology}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}

Revision as of 20:43, 18 December 2020

Reaction RIB5PISOM-RXN

  • direction:
    • reversible
  • common-name:
    • ribose-5-phosphate isomerase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P124-PWY, Bifidobacterium shunt:
    • 12 reactions found over 15 reactions in the full pathway
  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle):
    • 11 reactions found over 12 reactions in the full pathway
  • NONOXIPENT-PWY, pentose phosphate pathway (non-oxidative branch):
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-5723, Rubisco shunt:
    • 10 reactions found over 10 reactions in the full pathway
  • CALVIN-PWY, Calvin-Benson-Bassham cycle:
    • 12 reactions found over 13 reactions in the full pathway
  • PWY-1861, formaldehyde assimilation II (assimilatory RuMP Cycle):
    • 7 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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