Difference between revisions of "Trans-3-cis-5-dienoyl-CoA"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GTP-CYCLOHYDRO-I-RXN GTP-CYCLOHYDRO-I-RXN] == * direction: ** left-to-right * common-name: ** gtp c...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9680 RXN-9680] == * direction: ** left-to-right * common-name: ** dimethylglycine-betaine methy...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GTP-CYCLOHYDRO-I-RXN GTP-CYCLOHYDRO-I-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9680 RXN-9680] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** gtp cyclohydrolase
+
** dimethylglycine-betaine methyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.5.4.16 ec-3.5.4.16]
+
** [http://enzyme.expasy.org/EC/2.1.1.161 ec-2.1.1.161]
 +
* synonymous:
 +
** apdmt
 +
** s-adenosyl-l-methionine:n,n-dimethylglycine n-methyltransferase
 +
** sarcosine dimethylglycine n-methyltransferase
 +
** glycine sarcosine dimethylglycine n-methyltransferase
 +
** sarcosine-dimethylglycine methyltransferase
 +
** sdmt
 +
** gsdmt
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GTP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[DIHYDRONEOPTERIN-P3]][c] '''+''' 1 [[FORMATE]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[DIMETHYL-GLYCINE]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[BETAINE]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ00877]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ12118]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ10116]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ12128]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
** Category: [[annotation]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ12119]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ11087]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ14716]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ18177]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ12116]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ03081]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ02539]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ02540]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY0-1433]], tetrahydromonapterin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1433 PWY0-1433]
+
* [[P541-PWY]], glycine betaine biosynthesis IV (from glycine): [http://metacyc.org/META/NEW-IMAGE?object=P541-PWY P541-PWY]
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-7442]], drosopterin and aurodrosopterin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7442 PWY-7442]
+
* [[PWY-6004]], glycine betaine biosynthesis V (from glycine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6004 PWY-6004]
−
** '''3''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-6703]], preQ0 biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6703 PWY-6703]
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7852]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis IV (Plasmodium): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7852 PWY-7852]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6147]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6147 PWY-6147]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5664]], erythro-tetrahydrobiopterin biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5664 PWY-5664]
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6983]], threo-tetrahydrobiopterin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6983 PWY-6983]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-5663]], erythro-tetrahydrobiopterin biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5663 PWY-5663]
 
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17473 17473]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10073 10073]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00424 R00424]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07244 R07244]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P19465 P19465]
 
−
** [http://www.uniprot.org/uniprot/P22288 P22288]
 
−
** [http://www.uniprot.org/uniprot/P43866 P43866]
 
−
** [http://www.uniprot.org/uniprot/P51594 P51594]
 
−
** [http://www.uniprot.org/uniprot/P64207 P64207]
 
−
** [http://www.uniprot.org/uniprot/Q9CGE3 Q9CGE3]
 
−
** [http://www.uniprot.org/uniprot/O66603 O66603]
 
−
** [http://www.uniprot.org/uniprot/P56462 P56462]
 
−
** [http://www.uniprot.org/uniprot/P0A6T5 P0A6T5]
 
−
** [http://www.uniprot.org/uniprot/P50141 P50141]
 
−
** [http://www.uniprot.org/uniprot/P30793 P30793]
 
−
** [http://www.uniprot.org/uniprot/P51601 P51601]
 
−
** [http://www.uniprot.org/uniprot/Q05915 Q05915]
 
−
** [http://www.uniprot.org/uniprot/P51597 P51597]
 
−
** [http://www.uniprot.org/uniprot/P51600 P51600]
 
−
** [http://www.uniprot.org/uniprot/Q94465 Q94465]
 
−
** [http://www.uniprot.org/uniprot/Q55759 Q55759]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=gtp cyclohydrolase}}
+
{{#set: common-name=dimethylglycine-betaine methyltransferase}}
−
{{#set: ec-number=ec-3.5.4.16}}
+
{{#set: ec-number=ec-2.1.1.161}}
−
{{#set: nb gene associated=1}}
+
{{#set: synonymous=glycine sarcosine dimethylglycine n-methyltransferase|sarcosine dimethylglycine n-methyltransferase|sarcosine-dimethylglycine methyltransferase|gsdmt|apdmt|sdmt|s-adenosyl-l-methionine:n,n-dimethylglycine n-methyltransferase}}
−
{{#set: nb pathway associated=8}}
+
{{#set: nb gene associated=11}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 14:24, 26 August 2019

Reaction RXN-9680

  • direction:
    • left-to-right
  • common-name:
    • dimethylglycine-betaine methyltransferase
  • ec-number:
  • synonymous:
    • apdmt
    • s-adenosyl-l-methionine:n,n-dimethylglycine n-methyltransferase
    • sarcosine dimethylglycine n-methyltransferase
    • glycine sarcosine dimethylglycine n-methyltransferase
    • sarcosine-dimethylglycine methyltransferase
    • sdmt
    • gsdmt

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P541-PWY, glycine betaine biosynthesis IV (from glycine): P541-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6004, glycine betaine biosynthesis V (from glycine): PWY-6004
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links






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