Difference between revisions of "TransportSeed-CL-"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-722 RXN0-722] == * direction: ** left-to-right * common-name: ** 2'-deoxyuridine 5'-diphosphat...")
(Created page with "Category:reaction == Reaction TransportSeed-CL- == * direction: ** left-to-right == Reaction formula == * 1.0 CL-[e] '''=>''' 1.0 CL-[c] == Gene(s) associated with...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-722 RXN0-722] ==
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== Reaction TransportSeed-CL- ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** 2'-deoxyuridine 5'-diphosphate:oxidized nrdh glutaredoxin-like protein oxidoreductase
 
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** ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
 
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* ec-number:
 
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** [http://enzyme.expasy.org/EC/1.17.4.1 ec-1.17.4.1]
 
 
== Reaction formula ==
 
== Reaction formula ==
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* 1 [[Reduced-NrdH-Proteins]][c] '''+''' 1 [[UDP]][c] '''=>''' 1 [[DUDP]][c] '''+''' 1 [[Oxidized-NrdH-Proteins]][c] '''+''' 1 [[WATER]][c]
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* 1.0 [[CL-]][e] '''=>''' 1.0 [[CL-]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* Gene: [[SJ03698]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ21121]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ17066]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[SJ21120]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ18284]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ14458]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ20794]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ03697]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ16809]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
 
−
** '''14''' reactions found over '''13''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from extracellular to cytosol compartment
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=2'-deoxyuridine 5'-diphosphate:oxidized nrdh glutaredoxin-like protein oxidoreductase|ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor}}
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{{#set: nb gene associated=0}}
−
{{#set: ec-number=ec-1.17.4.1}}
+
{{#set: nb pathway associated=0}}
−
{{#set: nb gene associated=9}}
+
{{#set: reconstruction category=manual}}
−
{{#set: nb pathway associated=1}}
+
{{#set: reconstruction tool=curation}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction comment=added to manage seeds from extracellular to cytosol compartment}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction source=import_from_medium}}
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Latest revision as of 11:21, 18 March 2021

Reaction TransportSeed-CL-

  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=TransportSeed-CL-&oldid=141536"