Difference between revisions of "TransportSeed-COB-I-ALAMIN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17875 RXN-17875] == * direction: ** left-to-right * common-name: ** methionine aminopeptidase *...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNITHINE-GLU-AMINOTRANSFERASE-RXN ORNITHINE-GLU-AMINOTRANSFERASE-RXN] == * direction: ** reversibl...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17875 RXN-17875] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNITHINE-GLU-AMINOTRANSFERASE-RXN ORNITHINE-GLU-AMINOTRANSFERASE-RXN] ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** methionine aminopeptidase
+
** ornithine--oxo-glutarate aminotransferase
 +
** ornithine-δ-aminotransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.4.11.18 ec-3.4.11.18]
+
** [http://enzyme.expasy.org/EC/2.6.1.13 ec-2.6.1.13]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[L-methionyl-glycyl-Protein]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[MET]][c] '''+''' 1 [[N-terminal-glycine]][c]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[L-ORNITHINE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[L-GLUTAMATE_GAMMA-SEMIALDEHYDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ16939]]
+
* Gene: [[SJ09475]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ18138]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ01604]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ16932]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ16573]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ02903]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7800]], Ac/N-end rule pathway: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7800 PWY-7800]
+
* [[PWY-6922]], L-N&delta;-acetylornithine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6922 PWY-6922]
−
** '''6''' reactions found over '''21''' reactions in the full pathway
+
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[ARGININE-SYN4-PWY]], L-ornithine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=ARGININE-SYN4-PWY ARGININE-SYN4-PWY]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-3341]], L-proline biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3341 PWY-3341]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6344]], L-ornithine degradation II (Stickland reaction): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6344 PWY-6344]
 +
** '''2''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-4981]], L-proline biosynthesis II (from arginine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-4981 PWY-4981]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[ARG-PRO-PWY]], L-arginine degradation VI (arginase 2 pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARG-PRO-PWY ARG-PRO-PWY]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[CITRULBIO-PWY]], L-citrulline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=CITRULBIO-PWY CITRULBIO-PWY]
 +
** '''7''' reactions found over '''8''' reactions in the full pathway
 +
* [[ARGASEDEG-PWY]], L-arginine degradation I (arginase pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARGASEDEG-PWY ARGASEDEG-PWY]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=left-to-right}}
+
* RHEA:
−
{{#set: common-name=methionine aminopeptidase}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25160 25160]
−
{{#set: ec-number=ec-3.4.11.18}}
+
* LIGAND-RXN:
−
{{#set: nb gene associated=6}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00667 R00667]
−
{{#set: nb pathway associated=1}}
+
{{#set: direction=reversible}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: common-name=ornithine-&delta;-aminotransferase|ornithine--oxo-glutarate aminotransferase}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: ec-number=ec-2.6.1.13}}
 +
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=8}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}

Revision as of 09:32, 27 August 2019

Reaction ORNITHINE-GLU-AMINOTRANSFERASE-RXN

  • direction:
    • reversible
  • common-name:
    • ornithine--oxo-glutarate aminotransferase
    • ornithine-δ-aminotransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6922, L-Nδ-acetylornithine biosynthesis: PWY-6922
    • 5 reactions found over 7 reactions in the full pathway
  • ARGININE-SYN4-PWY, L-ornithine biosynthesis II: ARGININE-SYN4-PWY
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-3341, L-proline biosynthesis III: PWY-3341
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6344, L-ornithine degradation II (Stickland reaction): PWY-6344
    • 2 reactions found over 9 reactions in the full pathway
  • PWY-4981, L-proline biosynthesis II (from arginine): PWY-4981
    • 3 reactions found over 6 reactions in the full pathway
  • ARG-PRO-PWY, L-arginine degradation VI (arginase 2 pathway): ARG-PRO-PWY
    • 3 reactions found over 4 reactions in the full pathway
  • CITRULBIO-PWY, L-citrulline biosynthesis: CITRULBIO-PWY
    • 7 reactions found over 8 reactions in the full pathway
  • ARGASEDEG-PWY, L-arginine degradation I (arginase pathway): ARGASEDEG-PWY
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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