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| | [[Category:reaction]] | | [[Category:reaction]] |
| − | == Reaction RXN-9524 == | + | == Reaction TransportSeed-FE+3 == |
| | * direction: | | * direction: |
| | ** left-to-right | | ** left-to-right |
| − | * common-name:
| |
| − | ** 3-oxo-octanoyl-[acyl-carrier protein] reductase
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| − | ** fatty acid synthase
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| − | ** (r)-3-hydroxyoctanoyl-[acp] reductase
| |
| − | * ec-number:
| |
| − | ** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
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| − | ** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
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| − | ** [http://enzyme.expasy.org/EC/1.1.1.100 ec-1.1.1.100]
| |
| | == Reaction formula == | | == Reaction formula == |
| − | * 1 [[3-Oxo-octanoyl-ACPs]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[3-Hydroxy-octanoyl-ACPs]][c] '''+''' 1 [[NADP]][c] | + | * 1.0 [[FE+3]][e] '''=>''' 1.0 [[FE+3]][c] |
| | == Gene(s) associated with this reaction == | | == Gene(s) associated with this reaction == |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| |
| − | * Gene: [[SJ04443]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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| − | * Gene: [[SJ04229]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | ** Category: [[orthology]]
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| − | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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| − | * Gene: [[SJ17743]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | ** Category: [[orthology]]
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| − | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ19629]]
| |
| − | ** Category: [[annotation]]
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| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[SJ11672]]
| |
| − | ** Category: [[annotation]]
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| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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| − | * Gene: [[SJ15785]]
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| − | ** Category: [[orthology]]
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| − | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ12149]]
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| − | ** Category: [[orthology]]
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| − | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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| − | * Gene: [[SJ00320]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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| − | * Gene: [[SJ18059]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[SJ13014]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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| − | * Gene: [[SJ15983]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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| − | * Gene: [[SJ06617]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[SJ03883]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[SJ10624]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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| − | * Gene: [[SJ06944]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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| − | * Gene: [[SJ00613]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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| − | * Gene: [[SJ06616]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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| − | * Gene: [[SJ04769]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | </div>
| |
| | == Pathway(s) == | | == Pathway(s) == |
| − | * [[PWY-5994]], palmitate biosynthesis (animals and fungi, cytoplasm):
| |
| − | ** '''31''' reactions found over '''31''' reactions in the full pathway
| |
| − | * [[PWY-5971]], palmitate biosynthesis II (bacteria and plant cytoplasm):
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| − | ** '''31''' reactions found over '''31''' reactions in the full pathway
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| | == Reconstruction information == | | == Reconstruction information == |
| − | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | + | * category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from extracellular to cytosol compartment |
| − | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
| |
| − | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
| |
| | == External links == | | == External links == |
| | {{#set: direction=left-to-right}} | | {{#set: direction=left-to-right}} |
| − | {{#set: common-name=(r)-3-hydroxyoctanoyl-[acp] reductase|fatty acid synthase|3-oxo-octanoyl-[acyl-carrier protein] reductase}}
| + | {{#set: nb gene associated=0}} |
| − | {{#set: ec-number=ec-1.1.1.100|ec-2.3.1.86|ec-2.3.1.85}}
| + | {{#set: nb pathway associated=0}} |
| − | {{#set: nb gene associated=18}} | + | {{#set: reconstruction category=manual}} |
| − | {{#set: nb pathway associated=2}} | + | {{#set: reconstruction tool=curation}} |
| − | {{#set: reconstruction category=annotation|orthology}} | + | {{#set: reconstruction comment=added to manage seeds from extracellular to cytosol compartment}} |
| − | {{#set: reconstruction tool=pathwaytools|pantograph}} | + | {{#set: reconstruction source=import_from_medium}} |
| − | {{#set: reconstruction comment=n.a}} | |
| − | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | |
