Difference between revisions of "TransportSeed-FE+3"

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(Created page with "Category:reaction == Reaction PORPHOBILSYNTH-RXN == * direction: ** left-to-right * common-name: ** porphobilinogen synthase * ec-number: ** [http://enzyme.expasy.org/EC/4...")
(Created page with "Category:reaction == Reaction TransportSeed-FE+3 == * direction: ** left-to-right == Reaction formula == * 1.0 FE+3[e] '''=>''' 1.0 FE+3[c] == Gene(s) associated w...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction PORPHOBILSYNTH-RXN ==
+
== Reaction TransportSeed-FE+3 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** porphobilinogen synthase
 
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/4.2.1.24 ec-4.2.1.24]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 2 [[5-AMINO-LEVULINATE]][c] '''=>''' 1 [[PORPHOBILINOGEN]][c] '''+''' 1 [[PROTON]][c] '''+''' 2 [[WATER]][c]
+
* 1.0 [[FE+3]][e] '''=>''' 1.0 [[FE+3]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ07541]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07531]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate):
 
−
** '''6''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-5189]], tetrapyrrole biosynthesis II (from glycine):
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from extracellular to cytosol compartment
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24064 24064]
 
−
* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R00036 R00036]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P06214 P06214]
 
−
** [http://www.uniprot.org/uniprot/P13716 P13716]
 
−
** [http://www.uniprot.org/uniprot/Q7M315 Q7M315]
 
−
** [http://www.uniprot.org/uniprot/P30124 P30124]
 
−
** [http://www.uniprot.org/uniprot/Q9JV37 Q9JV37]
 
−
** [http://www.uniprot.org/uniprot/P30950 P30950]
 
−
** [http://www.uniprot.org/uniprot/Q60178 Q60178]
 
−
** [http://www.uniprot.org/uniprot/Q9PNU5 Q9PNU5]
 
−
** [http://www.uniprot.org/uniprot/Q59295 Q59295]
 
−
** [http://www.uniprot.org/uniprot/Q02250 Q02250]
 
−
** [http://www.uniprot.org/uniprot/P10518 P10518]
 
−
** [http://www.uniprot.org/uniprot/Q43148 Q43148]
 
−
** [http://www.uniprot.org/uniprot/Q42682 Q42682]
 
−
** [http://www.uniprot.org/uniprot/Q43058 Q43058]
 
−
** [http://www.uniprot.org/uniprot/Q59643 Q59643]
 
−
** [http://www.uniprot.org/uniprot/Q9S8B1 Q9S8B1]
 
−
** [http://www.uniprot.org/uniprot/P05373 P05373]
 
−
** [http://www.uniprot.org/uniprot/P0ACB2 P0ACB2]
 
−
** [http://www.uniprot.org/uniprot/Q42836 Q42836]
 
−
** [http://www.uniprot.org/uniprot/P43210 P43210]
 
−
** [http://www.uniprot.org/uniprot/Q9ZNC9 Q9ZNC9]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=porphobilinogen synthase}}
+
{{#set: nb gene associated=0}}
−
{{#set: ec-number=ec-4.2.1.24}}
+
{{#set: nb pathway associated=0}}
−
{{#set: nb gene associated=2}}
+
{{#set: reconstruction category=manual}}
−
{{#set: nb pathway associated=2}}
+
{{#set: reconstruction tool=curation}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction comment=added to manage seeds from extracellular to cytosol compartment}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction source=import_from_medium}}
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana}}
 

Latest revision as of 11:20, 18 March 2021

Reaction TransportSeed-FE+3

  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

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