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| | [[Category:reaction]] | | [[Category:reaction]] |
| − | == Reaction GALACTOKIN-RXN == | + | == Reaction TransportSeed-MN+2 == |
| | * direction: | | * direction: |
| − | ** reversible | + | ** left-to-right |
| − | * common-name:
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| − | ** galactokinase
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| − | * ec-number:
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| − | ** [http://enzyme.expasy.org/EC/2.7.1.6 ec-2.7.1.6]
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| | == Reaction formula == | | == Reaction formula == |
| − | * 1 [[ALPHA-D-GALACTOSE]][c] '''+''' 1 [[ATP]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[GALACTOSE-1P]][c] '''+''' 1 [[PROTON]][c] | + | * 1.0 [[MN+2]][e] '''=>''' 1.0 [[MN+2]][c] |
| | == Gene(s) associated with this reaction == | | == Gene(s) associated with this reaction == |
| − | * Gene: [[SJ17935]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | ** Category: [[orthology]]
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| − | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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| − | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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| − | * Gene: [[SJ19552]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | ** Category: [[orthology]]
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| − | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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| − | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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| − | * Gene: [[SJ13010]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| | == Pathway(s) == | | == Pathway(s) == |
| − | * [[PWY-3821]], D-galactose detoxification:
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| − | ** '''3''' reactions found over '''3''' reactions in the full pathway
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| − | * [[PWY-6527]], stachyose degradation:
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| − | ** '''7''' reactions found over '''7''' reactions in the full pathway
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| − | * [[PWY-6317]], D-galactose degradation I (Leloir pathway):
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| − | ** '''5''' reactions found over '''5''' reactions in the full pathway
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| − | * [[PWY66-422]]:
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| − | ** '''5''' reactions found over '''n.a''' reactions in the full pathway
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| | == Reconstruction information == | | == Reconstruction information == |
| − | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | + | * category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from extracellular to cytosol compartment |
| − | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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| − | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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| − | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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| | == External links == | | == External links == |
| − | * RHEA:
| + | {{#set: direction=left-to-right}} |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13556 13556]
| + | {{#set: nb gene associated=0}} |
| − | * LIGAND-RXN:
| + | {{#set: nb pathway associated=0}} |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R01092 R01092]
| + | {{#set: reconstruction category=manual}} |
| − | * UNIPROT:
| + | {{#set: reconstruction tool=curation}} |
| − | ** [http://www.uniprot.org/uniprot/P09608 P09608]
| + | {{#set: reconstruction comment=added to manage seeds from extracellular to cytosol compartment}} |
| − | ** [http://www.uniprot.org/uniprot/Q01415 Q01415]
| + | {{#set: reconstruction source=import_from_medium}} |
| − | ** [http://www.uniprot.org/uniprot/P22713 P22713]
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| − | ** [http://www.uniprot.org/uniprot/P31767 P31767]
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| − | ** [http://www.uniprot.org/uniprot/Q8X7P4 Q8X7P4]
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| − | ** [http://www.uniprot.org/uniprot/Q9R7D7 Q9R7D7]
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| − | ** [http://www.uniprot.org/uniprot/P96993 P96993]
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| − | ** [http://www.uniprot.org/uniprot/P04385 P04385]
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| − | ** [http://www.uniprot.org/uniprot/P0A6T3 P0A6T3]
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| − | ** [http://www.uniprot.org/uniprot/P13227 P13227]
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| − | ** [http://www.uniprot.org/uniprot/P39574 P39574]
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| − | ** [http://www.uniprot.org/uniprot/P13045 P13045]
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| − | ** [http://www.uniprot.org/uniprot/Q9SEE5 Q9SEE5]
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| − | {{#set: direction=reversible}} | |
| − | {{#set: common-name=galactokinase}}
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| − | {{#set: ec-number=ec-2.7.1.6}}
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| − | {{#set: nb gene associated=3}} | |
| − | {{#set: nb pathway associated=4}} | |
| − | {{#set: reconstruction category=annotation|orthology}} | |
| − | {{#set: reconstruction tool=pathwaytools|pantograph}} | |
| − | {{#set: reconstruction comment=n.a}} | |
| − | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | |
