Difference between revisions of "TransportSeed-MN+2"

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(Created page with "Category:reaction == Reaction 3-OXOACYL-ACP-SYNTH-RXN == * direction: ** left-to-right * common-name: ** fatty acid synthase * ec-number: ** [http://enzyme.expasy.org/EC/2...")
(Created page with "Category:reaction == Reaction GALACTOKIN-RXN == * direction: ** reversible * common-name: ** galactokinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.6 ec-2.7.1.6]...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3-OXOACYL-ACP-SYNTH-RXN ==
+
== Reaction GALACTOKIN-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** fatty acid synthase
+
** galactokinase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179]
+
** [http://enzyme.expasy.org/EC/2.7.1.6 ec-2.7.1.6]
−
** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
 
−
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 
−
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Saturated-Fatty-Acyl-ACPs]][c] '''=>''' 1 [[ACP]][c] '''+''' 1 [[B-KETOACYL-ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
* 1 [[ALPHA-D-GALACTOSE]][c] '''+''' 1 [[ATP]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[GALACTOSE-1P]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ17935]]
−
* Gene: [[SJ06617]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ04443]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ06944]]
+
* Gene: [[SJ19552]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ00320]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ04769]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06616]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ19629]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ15983]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ17743]]
+
* Gene: [[SJ13010]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ18059]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ00613]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ13014]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ10624]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ11672]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ03883]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ00005]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ15984]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[FASYN-ELONG-PWY]], fatty acid elongation -- saturated:
+
* [[PWY-3821]], D-galactose detoxification:
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6527]], stachyose degradation:
 +
** '''7''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6317]], D-galactose degradation I (Leloir pathway):
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY66-422]]:
 +
** '''5''' reactions found over '''n.a''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13556 13556]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01092 R01092]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P23902 P23902]
+
** [http://www.uniprot.org/uniprot/P09608 P09608]
−
** [http://www.uniprot.org/uniprot/P0A6R0 P0A6R0]
+
** [http://www.uniprot.org/uniprot/Q01415 Q01415]
−
** [http://www.uniprot.org/uniprot/P49327 P49327]
+
** [http://www.uniprot.org/uniprot/P22713 P22713]
−
** [http://www.uniprot.org/uniprot/P43710 P43710]
+
** [http://www.uniprot.org/uniprot/P31767 P31767]
−
** [http://www.uniprot.org/uniprot/Q9HYR2 Q9HYR2]
+
** [http://www.uniprot.org/uniprot/Q8X7P4 Q8X7P4]
−
** [http://www.uniprot.org/uniprot/O67612 O67612]
+
** [http://www.uniprot.org/uniprot/Q9R7D7 Q9R7D7]
−
** [http://www.uniprot.org/uniprot/P20582 P20582]
+
** [http://www.uniprot.org/uniprot/P96993 P96993]
−
** [http://www.uniprot.org/uniprot/Q9JT63 Q9JT63]
+
** [http://www.uniprot.org/uniprot/P04385 P04385]
−
** [http://www.uniprot.org/uniprot/Q9JW56 Q9JW56]
+
** [http://www.uniprot.org/uniprot/P0A6T3 P0A6T3]
−
** [http://www.uniprot.org/uniprot/Q9PMZ6 Q9PMZ6]
+
** [http://www.uniprot.org/uniprot/P13227 P13227]
−
** [http://www.uniprot.org/uniprot/P43711 P43711]
+
** [http://www.uniprot.org/uniprot/P39574 P39574]
−
** [http://www.uniprot.org/uniprot/O25284 O25284]
+
** [http://www.uniprot.org/uniprot/P13045 P13045]
−
** [http://www.uniprot.org/uniprot/Q9JX65 Q9JX65]
+
** [http://www.uniprot.org/uniprot/Q9SEE5 Q9SEE5]
−
** [http://www.uniprot.org/uniprot/O34340 O34340]
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/Q9PI63 Q9PI63]
+
{{#set: common-name=galactokinase}}
−
** [http://www.uniprot.org/uniprot/P0AAI5 P0AAI5]
+
{{#set: ec-number=ec-2.7.1.6}}
−
** [http://www.uniprot.org/uniprot/Q07510 Q07510]
+
{{#set: nb gene associated=3}}
−
** [http://www.uniprot.org/uniprot/Q06097 Q06097]
+
{{#set: nb pathway associated=4}}
−
** [http://www.uniprot.org/uniprot/P41175 P41175]
 
−
** [http://www.uniprot.org/uniprot/P31176 P31176]
 
−
** [http://www.uniprot.org/uniprot/Q40027 Q40027]
 
−
** [http://www.uniprot.org/uniprot/Q40028 Q40028]
 
−
** [http://www.uniprot.org/uniprot/P73283 P73283]
 
−
** [http://www.uniprot.org/uniprot/P0A953 P0A953]
 
−
** [http://www.uniprot.org/uniprot/O64485 O64485]
 
−
** [http://www.uniprot.org/uniprot/O65677 O65677]
 
−
** [http://www.uniprot.org/uniprot/Q39310 Q39310]
 
−
** [http://www.uniprot.org/uniprot/O23738 O23738]
 
−
** [http://www.uniprot.org/uniprot/Q41134 Q41134]
 
−
** [http://www.uniprot.org/uniprot/Q41135 Q41135]
 
−
** [http://www.uniprot.org/uniprot/Q54208 Q54208]
 
−
** [http://www.uniprot.org/uniprot/O54440 O54440]
 
−
** [http://www.uniprot.org/uniprot/P55338 P55338]
 
−
** [http://www.uniprot.org/uniprot/Q9RA31 Q9RA31]
 
−
** [http://www.uniprot.org/uniprot/P12276 P12276]
 
−
** [http://www.uniprot.org/uniprot/P12785 P12785]
 
−
</div>
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=fatty acid synthase}}
 
−
{{#set: ec-number=ec-2.3.1.41|ec-2.3.1.179|ec-2.3.1.85|ec-2.3.1.86}}
 
−
{{#set: nb gene associated=17}}
 
−
{{#set: nb pathway associated=1}}
 
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:38, 5 January 2021

Reaction GALACTOKIN-RXN

  • direction:
    • reversible
  • common-name:
    • galactokinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-3821, D-galactose detoxification:
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6527, stachyose degradation:
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-6317, D-galactose degradation I (Leloir pathway):
    • 5 reactions found over 5 reactions in the full pathway
  • PWY66-422:
    • 5 reactions found over n.a reactions in the full pathway

Reconstruction information

External links





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