Difference between revisions of "TransportSeed-SULFATE"

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(Created page with "Category:reaction == Reaction 1.1.1.271-RXN == * direction: ** left-to-right * common-name: ** gdp-fucose synthase * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.271 e...")
(Created page with "Category:reaction == Reaction 5-FORMYL-THF-CYCLO-LIGASE-RXN == * direction: ** left-to-right * common-name: ** 5-formyltetrahydrofolate cyclo-ligase * ec-number: ** [http:...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 1.1.1.271-RXN ==
+
== Reaction 5-FORMYL-THF-CYCLO-LIGASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** gdp-fucose synthase
+
** 5-formyltetrahydrofolate cyclo-ligase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.271 ec-1.1.1.271]
+
** [http://enzyme.expasy.org/EC/6.3.3.2 ec-6.3.3.2]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CPD-13118]][c] '''+''' 1 [[NADP]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[N5-Formyl-THF-Glu-N]][c] '''=>''' 1 [[5-10-METHENYL-THF-GLU-N]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ05880]]
+
* Gene: [[SJ19600]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ02064]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-66]], GDP-L-fucose biosynthesis I (from GDP-D-mannose):
+
* [[PWY-2201]], folate transformations I:
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[1CMET2-PWY]], folate transformations III (E. coli):
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-3841]], folate transformations II (plants):
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18887 18887]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10489 10489]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R05692 R05692]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02301 R02301]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P80405 P80405]
 +
** [http://www.uniprot.org/uniprot/P49914 P49914]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=gdp-fucose synthase}}
+
{{#set: common-name=5-formyltetrahydrofolate cyclo-ligase}}
−
{{#set: ec-number=ec-1.1.1.271}}
+
{{#set: ec-number=ec-6.3.3.2}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=3}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 19:05, 14 January 2021

Reaction 5-FORMYL-THF-CYCLO-LIGASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • 5-formyltetrahydrofolate cyclo-ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-2201, folate transformations I:
    • 9 reactions found over 10 reactions in the full pathway
  • 1CMET2-PWY, folate transformations III (E. coli):
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-3841, folate transformations II (plants):
    • 9 reactions found over 11 reactions in the full pathway

Reconstruction information

External links





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