Difference between revisions of "TransportSeed-WATER"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACONITATEDEHYDR-RXN ACONITATEDEHYDR-RXN] == * direction: ** reversible * common-name: ** citrate hy...")
(Created page with "Category:reaction == Reaction TransportSeed-WATER == * direction: ** left-to-right == Reaction formula == * 1.0 WATER[e] '''=>''' 1.0 WATER[c] == Gene(s) associate...")
 
(8 intermediate revisions by 4 users not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACONITATEDEHYDR-RXN ACONITATEDEHYDR-RXN] ==
+
== Reaction TransportSeed-WATER ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
 
−
** citrate hydro-lyase (cis-aconitate-forming)
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CIT]][c] '''<=>''' 1 [[CIS-ACONITATE]][c] '''+''' 1 [[WATER]][c]
+
* 1.0 [[WATER]][e] '''=>''' 1.0 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ18471]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ22396]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549]
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392]
 
−
** '''6''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[REDCITCYC]], TCA cycle VIII (Helicobacter): [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC]
 
−
** '''5''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254]
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
 
−
** '''10''' reactions found over '''12''' reactions in the full pathway
 
−
* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
 
−
** '''11''' reactions found over '''16''' reactions in the full pathway
 
−
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
 
−
** '''6''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-5750]], itaconate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5750 PWY-5750]
 
−
** '''3''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
 
−
** '''9''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
 
−
** '''8''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
 
−
** '''11''' reactions found over '''19''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from extracellular to cytosol compartment
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
{{#set: direction=left-to-right}}
−
* RHEA:
+
{{#set: nb gene associated=0}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10231 10231]
+
{{#set: nb pathway associated=0}}
−
* PIR:
+
{{#set: reconstruction category=manual}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A35544 A35544]
+
{{#set: reconstruction tool=curation}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44153 A44153]
+
{{#set: reconstruction comment=added to manage seeds from extracellular to cytosol compartment}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44154 A44154]
+
{{#set: reconstruction source=import_from_medium}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A47184 A47184]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81801 A81801]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B48642 B48642]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64362 C64362]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64617 C64617]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C81356 C81356]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F64734 F64734]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F70873 F70873]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G64875 G64875]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69599 G69599]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G86708 G86708]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81775 H81775]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17526 S17526]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S18720 S18720]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26403 S26403]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S49849 S49849]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S50387 S50387]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57528 S57528]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57805 S57805]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S76777 S76777]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04693 T04693]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04820 T04820]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07611 T07611]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T10101 T10101]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52543 T52543]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P16276 P16276]
 
−
** [http://www.uniprot.org/uniprot/Q01059 Q01059]
 
−
** [http://www.uniprot.org/uniprot/Q9TSA1 Q9TSA1]
 
−
** [http://www.uniprot.org/uniprot/Q9JTI5 Q9JTI5]
 
−
** [http://www.uniprot.org/uniprot/P37032 P37032]
 
−
** [http://www.uniprot.org/uniprot/P81291 P81291]
 
−
** [http://www.uniprot.org/uniprot/Q9PP88 Q9PP88]
 
−
** [http://www.uniprot.org/uniprot/P36683 P36683]
 
−
** [http://www.uniprot.org/uniprot/O53166 O53166]
 
−
** [http://www.uniprot.org/uniprot/P25516 P25516]
 
−
** [http://www.uniprot.org/uniprot/P09339 P09339]
 
−
** [http://www.uniprot.org/uniprot/Q9CHQ5 Q9CHQ5]
 
−
** [http://www.uniprot.org/uniprot/Q9JT05 Q9JT05]
 
−
** [http://www.uniprot.org/uniprot/Q99798 Q99798]
 
−
** [http://www.uniprot.org/uniprot/P28271 P28271]
 
−
** [http://www.uniprot.org/uniprot/P21399 P21399]
 
−
** [http://www.uniprot.org/uniprot/Q42669 Q42669]
 
−
** [http://www.uniprot.org/uniprot/P19414 P19414]
 
−
** [http://www.uniprot.org/uniprot/P20004 P20004]
 
−
** [http://www.uniprot.org/uniprot/P49609 P49609]
 
−
** [http://www.uniprot.org/uniprot/P74582 P74582]
 
−
** [http://www.uniprot.org/uniprot/Q42560 Q42560]
 
−
** [http://www.uniprot.org/uniprot/Q9SZ36 Q9SZ36]
 
−
** [http://www.uniprot.org/uniprot/O04916 O04916]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01325 R01325]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=citrate hydro-lyase (cis-aconitate-forming)}}
 
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=16}}
 
−
{{#set: reconstruction category=orthology|annotation}}
 
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Latest revision as of 11:21, 18 March 2021

Reaction TransportSeed-WATER

  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=TransportSeed-WATER&oldid=141513"