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| | [[Category:reaction]] | | [[Category:reaction]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASNSYNB-RXN ASNSYNB-RXN] == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TransportSeed-CPD-3 TransportSeed-CPD-3] == |
| | * direction: | | * direction: |
| | ** left-to-right | | ** left-to-right |
| − | * common-name:
| |
| − | ** l-aspartate:l-glutamine amido-ligase (amp-forming)
| |
| − | ** asparagine synthase (glutamine-hydrolyzing)
| |
| − | * ec-number:
| |
| − | ** [http://enzyme.expasy.org/EC/6.3.5.4 ec-6.3.5.4]
| |
| | == Reaction formula == | | == Reaction formula == |
| − | * 1 [[ATP]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[L-ASPARTATE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[ASN]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c] | + | * 1.0 [[CPD-3]][e] '''=>''' 1.0 [[CPD-3]][c] |
| | == Gene(s) associated with this reaction == | | == Gene(s) associated with this reaction == |
| − | * Gene: [[SJ13639]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ13939]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[SJ07729]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ22095]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| | == Pathway(s) == | | == Pathway(s) == |
| − | * [[ASPARAGINE-BIOSYNTHESIS]], L-asparagine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=ASPARAGINE-BIOSYNTHESIS ASPARAGINE-BIOSYNTHESIS]
| |
| − | ** '''1''' reactions found over '''1''' reactions in the full pathway
| |
| | == Reconstruction information == | | == Reconstruction information == |
| − | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | + | * category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from extracellular to cytosol compartment |
| − | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
| |
| − | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
| |
| | == External links == | | == External links == |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| |
| − | * RHEA:
| |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12229 12229]
| |
| − | * LIGAND-RXN:
| |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R00578 R00578]
| |
| − | * UNIPROT:
| |
| − | ** [http://www.uniprot.org/uniprot/P22106 P22106]
| |
| − | ** [http://www.uniprot.org/uniprot/P08243 P08243]
| |
| − | ** [http://www.uniprot.org/uniprot/P19891 P19891]
| |
| − | ** [http://www.uniprot.org/uniprot/P17714 P17714]
| |
| − | ** [http://www.uniprot.org/uniprot/P19251 P19251]
| |
| − | ** [http://www.uniprot.org/uniprot/P19252 P19252]
| |
| − | ** [http://www.uniprot.org/uniprot/Q58516 Q58516]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9CDJ2 Q9CDJ2]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9UZJ0 Q9UZJ0]
| |
| − | ** [http://www.uniprot.org/uniprot/O58829 O58829]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9UZL3 Q9UZL3]
| |
| − | ** [http://www.uniprot.org/uniprot/O26514 O26514]
| |
| − | ** [http://www.uniprot.org/uniprot/Q42792 Q42792]
| |
| − | ** [http://www.uniprot.org/uniprot/P31752 P31752]
| |
| − | ** [http://www.uniprot.org/uniprot/P49091 P49091]
| |
| − | ** [http://www.uniprot.org/uniprot/P49089 P49089]
| |
| − | ** [http://www.uniprot.org/uniprot/P49088 P49088]
| |
| − | ** [http://www.uniprot.org/uniprot/P49090 P49090]
| |
| − | ** [http://www.uniprot.org/uniprot/P49092 P49092]
| |
| − | ** [http://www.uniprot.org/uniprot/P49093 P49093]
| |
| − | ** [http://www.uniprot.org/uniprot/P49094 P49094]
| |
| − | ** [http://www.uniprot.org/uniprot/Q43011 Q43011]
| |
| − | ** [http://www.uniprot.org/uniprot/P93167 P93167]
| |
| − | ** [http://www.uniprot.org/uniprot/O49076 O49076]
| |
| − | ** [http://www.uniprot.org/uniprot/P49078 P49078]
| |
| − | ** [http://www.uniprot.org/uniprot/Q21463 Q21463]
| |
| − | ** [http://www.uniprot.org/uniprot/O77330 O77330]
| |
| − | ** [http://www.uniprot.org/uniprot/P78753 P78753]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9LFU1 Q9LFU1]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9ZST7 Q9ZST7]
| |
| − | </div>
| |
| | {{#set: direction=left-to-right}} | | {{#set: direction=left-to-right}} |
| − | {{#set: common-name=asparagine synthase (glutamine-hydrolyzing)|l-aspartate:l-glutamine amido-ligase (amp-forming)}}
| + | {{#set: nb gene associated=0}} |
| − | {{#set: ec-number=ec-6.3.5.4}}
| + | {{#set: nb pathway associated=0}} |
| − | {{#set: nb gene associated=4}} | + | {{#set: reconstruction category=manual}} |
| − | {{#set: nb pathway associated=1}} | + | {{#set: reconstruction tool=curation}} |
| − | {{#set: reconstruction category=orthology|annotation}} | + | {{#set: reconstruction comment=added to manage seeds from extracellular to cytosol compartment}} |
| − | {{#set: reconstruction tool=pantograph|pathwaytools}} | + | {{#set: reconstruction source=import_from_medium}} |
| − | {{#set: reconstruction comment=n.a}} | |
| − | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus}} | |
