Difference between revisions of "UDPGALth"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HISTAMINOTRANS-RXN HISTAMINOTRANS-RXN] == * direction: ** reversible * common-name: ** l-phenylalan...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GABATRANSAM-RXN GABATRANSAM-RXN] == * direction: ** reversible * common-name: ** 4-aminobutyrate tr...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HISTAMINOTRANS-RXN HISTAMINOTRANS-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GABATRANSAM-RXN GABATRANSAM-RXN] ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
−
** l-phenylalanine:2-oxoglutarate aminotransferase
+
** 4-aminobutyrate transaminase
−
** histidinol-phosphate aminotransferase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.6.1.9 ec-2.6.1.9]
+
** [http://enzyme.expasy.org/EC/2.6.1.19 ec-2.6.1.19]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[L-HISTIDINOL-P]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[IMIDAZOLE-ACETOL-P]][c]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[4-AMINO-BUTYRATE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[SUCC-S-ALD]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ07646]]
+
* Gene: [[SJ07892]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ05778]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ04188]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ20943]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[HISTSYN-PWY]], L-histidine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=HISTSYN-PWY HISTSYN-PWY]
+
* [[GLUDEG-I-PWY]], GABA shunt: [http://metacyc.org/META/NEW-IMAGE?object=GLUDEG-I-PWY GLUDEG-I-PWY]
−
** '''10''' reactions found over '''10''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6536]], 4-aminobutanoate degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6536 PWY-6536]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6537]], 4-aminobutanoate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6537 PWY-6537]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5022]], 4-aminobutanoate degradation V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5022 PWY-5022]
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6535]], 4-aminobutanoate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6535 PWY-6535]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-4321]], L-glutamate degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4321 PWY-4321]
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[P181-PWY]], nicotine degradation I (pyridine pathway): [http://metacyc.org/META/NEW-IMAGE?object=P181-PWY P181-PWY]
 +
** '''2''' reactions found over '''17''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23747 23747]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23355 23355]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03243 R03243]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01648 R01648]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P17731 P17731]
+
** [http://www.uniprot.org/uniprot/P22256 P22256]
−
** [http://www.uniprot.org/uniprot/P17736 P17736]
+
** [http://www.uniprot.org/uniprot/P50457 P50457]
−
** [http://www.uniprot.org/uniprot/P56099 P56099]
+
** [http://www.uniprot.org/uniprot/Q9UZ71 Q9UZ71]
−
** [http://www.uniprot.org/uniprot/Q9PII2 Q9PII2]
+
** [http://www.uniprot.org/uniprot/P50554 P50554]
−
** [http://www.uniprot.org/uniprot/Q02135 Q02135]
+
** [http://www.uniprot.org/uniprot/P80404 P80404]
−
** [http://www.uniprot.org/uniprot/Q58365 Q58365]
+
** [http://www.uniprot.org/uniprot/P14010 P14010]
−
** [http://www.uniprot.org/uniprot/Q9JTH8 Q9JTH8]
+
** [http://www.uniprot.org/uniprot/P17649 P17649]
−
** [http://www.uniprot.org/uniprot/P44423 P44423]
+
** [http://www.uniprot.org/uniprot/P40829 P40829]
−
** [http://www.uniprot.org/uniprot/P16246 P16246]
+
** [http://www.uniprot.org/uniprot/O13837 O13837]
−
** [http://www.uniprot.org/uniprot/P28735 P28735]
 
−
** [http://www.uniprot.org/uniprot/P36605 P36605]
 
−
** [http://www.uniprot.org/uniprot/P07172 P07172]
 
−
** [http://www.uniprot.org/uniprot/O82030 O82030]
 
−
** [http://www.uniprot.org/uniprot/Q9X7B8 Q9X7B8]
 
−
** [http://www.uniprot.org/uniprot/P10369 P10369]
 
−
** [http://www.uniprot.org/uniprot/P06986 P06986]
 
−
</div>
 
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=histidinol-phosphate aminotransferase|l-phenylalanine:2-oxoglutarate aminotransferase}}
+
{{#set: common-name=4-aminobutyrate transaminase}}
−
{{#set: ec-number=ec-2.6.1.9}}
+
{{#set: ec-number=ec-2.6.1.19}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=7}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 14:29, 26 August 2019

Reaction GABATRANSAM-RXN

  • direction:
    • reversible
  • common-name:
    • 4-aminobutyrate transaminase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • GLUDEG-I-PWY, GABA shunt: GLUDEG-I-PWY
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-6536, 4-aminobutanoate degradation III: PWY-6536
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6537, 4-aminobutanoate degradation II: PWY-6537
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-5022, 4-aminobutanoate degradation V: PWY-5022
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-6535, 4-aminobutanoate degradation I: PWY-6535
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-4321, L-glutamate degradation IV: PWY-4321
    • 3 reactions found over 5 reactions in the full pathway
  • P181-PWY, nicotine degradation I (pyridine pathway): P181-PWY
    • 2 reactions found over 17 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=UDPGALth&oldid=24549"