Difference between revisions of "UDPGLUCEPIM-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction QUINOPRIBOTRANS-RXN == * direction: ** left-to-right * common-name: ** quinolinate phosphoribosyltransferase (decarboxylating) ** nicotinate-...")
(Created page with "Category:reaction == Reaction UDPGLUCEPIM-RXN == * direction: ** reversible * common-name: ** udp-glucose 4-epimerase * ec-number: ** [http://enzyme.expasy.org/EC/5.1.3.2...")
 
(2 intermediate revisions by one other user not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction QUINOPRIBOTRANS-RXN ==
+
== Reaction UDPGLUCEPIM-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** quinolinate phosphoribosyltransferase (decarboxylating)
+
** udp-glucose 4-epimerase
−
** nicotinate-nucleotide diphosphorylase (carboxylating)
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.4.2.19 ec-2.4.2.19]
+
** [http://enzyme.expasy.org/EC/5.1.3.2 ec-5.1.3.2]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 2 [[PROTON]][c] '''+''' 1 [[PRPP]][c] '''+''' 1 [[QUINOLINATE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NICOTINATE_NUCLEOTIDE]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[CPD-12575]][c] '''<=>''' 1 [[CPD-14553]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ19144]]
+
* Gene: [[SJ16452]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
* Gene: [[SJ19552]]
−
* Gene: [[SJ04451]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ11253]]
+
* Gene: [[SJ17935]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5653]], NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde:
+
* [[PWY-6317]], D-galactose degradation I (Leloir pathway):
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[PYRIDNUCSYN-PWY]], NAD de novo biosynthesis I (from aspartate):
+
* [[PWY-7344]], UDP-&alpha;-D-galactose biosynthesis:
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[PWY-7342]], superpathway of nicotine biosynthesis:
+
* [[COLANSYN-PWY]], colanic acid building blocks biosynthesis:
−
** '''4''' reactions found over '''9''' reactions in the full pathway
+
** '''6''' reactions found over '''1''' reactions in the full pathway
−
* [[PWY-5316]], nicotine biosynthesis:
+
* [[PWY-6397]], mycolyl-arabinogalactan-peptidoglycan complex biosynthesis:
−
** '''3''' reactions found over '''9''' reactions in the full pathway
+
** '''1''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY-7328]], superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis:
 +
** '''5''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY66-422]]:
 +
** '''5''' reactions found over '''n.a''' reactions in the full pathway
 +
* [[PWY-3821]], D-galactose detoxification:
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6527]], stachyose degradation:
 +
** '''7''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR143428
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12735 12735]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22171 22171]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03348 R03348]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00291 R00291]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q9JSX8 Q9JSX8]
+
** [http://www.uniprot.org/uniprot/P35673 P35673]
−
** [http://www.uniprot.org/uniprot/Q57916 Q57916]
+
** [http://www.uniprot.org/uniprot/P22715 P22715]
−
** [http://www.uniprot.org/uniprot/P30011 P30011]
+
** [http://www.uniprot.org/uniprot/P21977 P21977]
−
** [http://www.uniprot.org/uniprot/P46714 P46714]
+
** [http://www.uniprot.org/uniprot/P24325 P24325]
−
** [http://www.uniprot.org/uniprot/Q15274 Q15274]
+
** [http://www.uniprot.org/uniprot/Q9CE66 Q9CE66]
−
** [http://www.uniprot.org/uniprot/P77938 P77938]
+
** [http://www.uniprot.org/uniprot/Q57664 Q57664]
−
{{#set: direction=left-to-right}}
+
** [http://www.uniprot.org/uniprot/P55180 P55180]
−
{{#set: common-name=quinolinate phosphoribosyltransferase (decarboxylating)|nicotinate-nucleotide diphosphorylase (carboxylating)}}
+
** [http://www.uniprot.org/uniprot/Q9PNG3 Q9PNG3]
−
{{#set: ec-number=ec-2.4.2.19}}
+
** [http://www.uniprot.org/uniprot/P56997 P56997]
 +
** [http://www.uniprot.org/uniprot/Q59083 Q59083]
 +
** [http://www.uniprot.org/uniprot/Q44016 Q44016]
 +
** [http://www.uniprot.org/uniprot/Q45291 Q45291]
 +
** [http://www.uniprot.org/uniprot/P96995 P96995]
 +
** [http://www.uniprot.org/uniprot/P45602 P45602]
 +
** [http://www.uniprot.org/uniprot/P18645 P18645]
 +
** [http://www.uniprot.org/uniprot/P26503 P26503]
 +
** [http://www.uniprot.org/uniprot/P40801 P40801]
 +
** [http://www.uniprot.org/uniprot/Q05026 Q05026]
 +
** [http://www.uniprot.org/uniprot/P56985 P56985]
 +
** [http://www.uniprot.org/uniprot/Q51148 Q51148]
 +
** [http://www.uniprot.org/uniprot/Q56093 Q56093]
 +
** [http://www.uniprot.org/uniprot/Q42605 Q42605]
 +
** [http://www.uniprot.org/uniprot/Q60109 Q60109]
 +
** [http://www.uniprot.org/uniprot/P72903 P72903]
 +
** [http://www.uniprot.org/uniprot/P72915 P72915]
 +
** [http://www.uniprot.org/uniprot/O66256 O66256]
 +
** [http://www.uniprot.org/uniprot/O64749 O64749]
 +
** [http://www.uniprot.org/uniprot/Q9SN58 Q9SN58]
 +
** [http://www.uniprot.org/uniprot/Q8VZ26 Q8VZ26]
 +
** [http://www.uniprot.org/uniprot/Q43070 Q43070]
 +
** [http://www.uniprot.org/uniprot/Q9T0A7 Q9T0A7]
 +
** [http://www.uniprot.org/uniprot/O65780 O65780]
 +
** [http://www.uniprot.org/uniprot/O65781 O65781]
 +
** [http://www.uniprot.org/uniprot/Q9RMC0 Q9RMC0]
 +
** [http://www.uniprot.org/uniprot/P04397 P04397]
 +
** [http://www.uniprot.org/uniprot/P09147 P09147]
 +
** [http://www.uniprot.org/uniprot/P13226 P13226]
 +
** [http://www.uniprot.org/uniprot/P09609 P09609]
 +
</div>
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=udp-glucose 4-epimerase}}
 +
{{#set: ec-number=ec-5.1.3.2}}
 
{{#set: nb gene associated=3}}
 
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=8}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction UDPGLUCEPIM-RXN

  • direction:
    • reversible
  • common-name:
    • udp-glucose 4-epimerase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6317, D-galactose degradation I (Leloir pathway):
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-7344, UDP-α-D-galactose biosynthesis:
    • 1 reactions found over 1 reactions in the full pathway
  • COLANSYN-PWY, colanic acid building blocks biosynthesis:
    • 6 reactions found over 1 reactions in the full pathway
  • PWY-6397, mycolyl-arabinogalactan-peptidoglycan complex biosynthesis:
    • 1 reactions found over 18 reactions in the full pathway
  • PWY-7328, superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis:
    • 5 reactions found over 2 reactions in the full pathway
  • PWY66-422:
    • 5 reactions found over n.a reactions in the full pathway
  • PWY-3821, D-galactose detoxification:
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6527, stachyose degradation:
    • 7 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=UDPGLUCEPIM-RXN&oldid=140599"