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| − | [[Category:reaction]] | + | [[Category:pathway]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-477 RXN66-477] == | + | == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560] == |
| − | * direction: | + | * taxonomic-range: |
| − | ** left-to-right | + | ** [http://metacyc.org/META/NEW-IMAGE?object=tax-5794 tax-5794] |
| | + | ** [http://metacyc.org/META/NEW-IMAGE?object=tax-1117 tax-1117] |
| | + | ** [http://metacyc.org/META/NEW-IMAGE?object=tax-33090 tax-33090] |
| | * common-name: | | * common-name: |
| − | ** straight chain fatty acyl-coa ligase | + | ** methylerythritol phosphate pathway ii |
| − | ** long-chain fatty acid-coa ligase
| + | == Reaction(s) found == |
| − | * ec-number:
| + | * [[2.7.1.148-RXN]] |
| − | ** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3]
| + | * [[2.7.7.60-RXN]] |
| − | == Reaction formula == | + | * [[DXPREDISOM-RXN]] |
| − | * 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[Odd-Straight-Chain-234-Sat-FA]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Odd-Saturated-Fatty-Acyl-CoA]][c] '''+''' 1 [[PPI]][c]
| + | * [[DXS-RXN]] |
| − | == Gene(s) associated with this reaction ==
| + | * [[IPPISOM-RXN]] |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| + | * [[ISPH2-RXN]] |
| − | * Gene: [[SJ08692]] | + | * [[RXN0-302]] |
| − | ** Category: [[annotation]]
| + | * [[RXN0-882]] |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| + | * [[RXN0-884]] |
| − | * Gene: [[SJ03650]]
| + | == Reaction(s) not found == |
| − | ** Category: [[annotation]] | + | All reactions of this pathways are in present |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| + | {{#set: taxonomic-range=tax-33090|tax-5794|tax-1117}} |
| − | ** Category: [[orthology]]
| + | {{#set: common-name=methylerythritol phosphate pathway ii}} |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| + | {{#set: nb reaction found=9}} |
| − | * Gene: [[SJ05591]]
| + | {{#set: completion rate=1.0}} |
| − | ** Category: [[annotation]] | + | {{#set: nb total reaction=9}} |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | |
| − | * Gene: [[SJ08690]]
| |
| − | ** Category: [[annotation]] | |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | |
| − | * Gene: [[SJ13972]]
| |
| − | ** Category: [[annotation]] | |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ08691]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | </div>
| |
| − | == Pathway(s) == | |
| − | * [[PWY66-388]], fatty acid α-oxidation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-388 PWY66-388]
| |
| − | ** '''2''' reactions found over '''7''' reactions in the full pathway
| |
| − | == Reconstruction information ==
| |
| − | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
| |
| − | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
| |
| − | == External links ==
| |
| − | {{#set: direction=left-to-right}} | |
| − | {{#set: common-name=long-chain fatty acid-coa ligase|straight chain fatty acyl-coa ligase}}
| |
| − | {{#set: ec-number=ec-6.2.1.3}} | |
| − | {{#set: nb gene associated=6}} | |
| − | {{#set: nb pathway associated=1}} | |
| − | {{#set: reconstruction category=orthology|annotation}}
| |
| − | {{#set: reconstruction tool=pathwaytools|pantograph}}
| |
| − | {{#set: reconstruction comment=n.a}}
| |
| − | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} | |
