Difference between revisions of "UROGENDECARBOX-RXN"

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(Created page with "Category:reaction == Reaction PYRROLINECARBREDUCT-RXN == * direction: ** left-to-right * common-name: ** pyrroline-5-carboxylate reductase * ec-number: ** [http://enzyme.e...")
(Created page with "Category:reaction == Reaction UROGENDECARBOX-RXN == * direction: ** left-to-right * common-name: ** uroporphyrinogen decarboxylase * ec-number: ** [http://enzyme.expasy.or...")
 
(3 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PYRROLINECARBREDUCT-RXN ==
+
== Reaction UROGENDECARBOX-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** pyrroline-5-carboxylate reductase
+
** uroporphyrinogen decarboxylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.5.1.2 ec-1.5.1.2]
+
** [http://enzyme.expasy.org/EC/4.1.1.37 ec-4.1.1.37]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[L-DELTA1-PYRROLINE_5-CARBOXYLATE]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[NAD-P-OR-NOP]][c] '''+''' 1 [[PRO]][c]
+
* 4 [[PROTON]][c] '''+''' 1 [[UROPORPHYRINOGEN-III]][c] '''=>''' 4 [[CARBON-DIOXIDE]][c] '''+''' 1 [[COPROPORPHYRINOGEN_III]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ22264]]
+
* Gene: [[SJ09367]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ15062]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ03594]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ11815]]
+
* Gene: [[SJ09370]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
Line 24: Line 27:
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-3341]], L-proline biosynthesis III (from L-ornithine):
+
* [[HEMESYN2-PWY]], heme b biosynthesis II (oxygen-independent):
−
** '''4''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PROSYN-PWY]], L-proline biosynthesis I (from L-glutamate):
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6344]], L-ornithine degradation II (Stickland reaction):
 
−
** '''2''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-4981]], L-proline biosynthesis II (from arginine):
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
−
* [[ARG-PRO-PWY]], L-arginine degradation VI (arginase 2 pathway):
 
 
** '''3''' reactions found over '''4''' reactions in the full pathway
 
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY0-1415]], superpathway of heme b biosynthesis from uroporphyrinogen-III:
 +
** '''5''' reactions found over '''n.a''' reactions in the full pathway
 +
* [[PWY-7766]], heme b biosynthesis IV (Gram-positive bacteria):
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent):
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[HEME-BIOSYNTHESIS-II]], heme b biosynthesis I (aerobic):
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5531]], 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic):
 +
** '''4''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent):
 +
** '''5''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR105140
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14107 14107]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19866 19866]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01251 R01251]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03197 R03197]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P32322 P32322]
+
** [http://www.uniprot.org/uniprot/P06132 P06132]
−
** [http://www.uniprot.org/uniprot/P27771 P27771]
+
** [http://www.uniprot.org/uniprot/P16891 P16891]
−
** [http://www.uniprot.org/uniprot/Q9CEF7 Q9CEF7]
+
** [http://www.uniprot.org/uniprot/P32395 P32395]
−
** [http://www.uniprot.org/uniprot/P14383 P14383]
+
** [http://www.uniprot.org/uniprot/Q9PN54 Q9PN54]
−
** [http://www.uniprot.org/uniprot/Q9PNL8 Q9PNL8]
+
** [http://www.uniprot.org/uniprot/Q9JV52 Q9JV52]
−
** [http://www.uniprot.org/uniprot/Q9JWW2 Q9JWW2]
+
** [http://www.uniprot.org/uniprot/P29680 P29680]
−
** [http://www.uniprot.org/uniprot/Q12740 Q12740]
+
** [http://www.uniprot.org/uniprot/P32347 P32347]
−
** [http://www.uniprot.org/uniprot/P22008 P22008]
+
** [http://www.uniprot.org/uniprot/P32920 P32920]
−
** [http://www.uniprot.org/uniprot/P54904 P54904]
+
** [http://www.uniprot.org/uniprot/P54224 P54224]
−
** [http://www.uniprot.org/uniprot/P0A9L8 P0A9L8]
+
** [http://www.uniprot.org/uniprot/O81220 O81220]
−
** [http://www.uniprot.org/uniprot/P17817 P17817]
+
** [http://www.uniprot.org/uniprot/P70697 P70697]
−
** [http://www.uniprot.org/uniprot/P32263 P32263]
 
−
** [http://www.uniprot.org/uniprot/Q12641 Q12641]
 
−
** [http://www.uniprot.org/uniprot/P46725 P46725]
 
−
** [http://www.uniprot.org/uniprot/P74572 P74572]
 
−
** [http://www.uniprot.org/uniprot/Q04708 Q04708]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=pyrroline-5-carboxylate reductase}}
+
{{#set: common-name=uroporphyrinogen decarboxylase}}
−
{{#set: ec-number=ec-1.5.1.2}}
+
{{#set: ec-number=ec-4.1.1.37}}
 
{{#set: nb gene associated=3}}
 
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=5}}
+
{{#set: nb pathway associated=7}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:20, 18 March 2021

Reaction UROGENDECARBOX-RXN

  • direction:
    • left-to-right
  • common-name:
    • uroporphyrinogen decarboxylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • HEMESYN2-PWY, heme b biosynthesis II (oxygen-independent):
    • 3 reactions found over 4 reactions in the full pathway
  • PWY0-1415, superpathway of heme b biosynthesis from uroporphyrinogen-III:
    • 5 reactions found over n.a reactions in the full pathway
  • PWY-7766, heme b biosynthesis IV (Gram-positive bacteria):
    • 3 reactions found over 5 reactions in the full pathway
  • CHLOROPHYLL-SYN, 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent):
    • 6 reactions found over 9 reactions in the full pathway
  • HEME-BIOSYNTHESIS-II, heme b biosynthesis I (aerobic):
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-5531, 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic):
    • 4 reactions found over 9 reactions in the full pathway
  • PWY-7159, 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent):
    • 5 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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