Difference between revisions of "URPHOS-RXN"

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(Created page with "Category:reaction == Reaction 2.1.1.114-RXN == * direction: ** left-to-right * common-name: ** hexaprenyldihydroxybenzoate methyltransferase ** s-adenosyl-l-methionine:3-h...")
(Created page with "Category:reaction == Reaction URPHOS-RXN == * direction: ** reversible * common-name: ** uridine phosphorylase * ec-number: ** [http://enzyme.expasy.org/EC/2.4.2.2 ec-2.4....")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 2.1.1.114-RXN ==
+
== Reaction URPHOS-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** hexaprenyldihydroxybenzoate methyltransferase
+
** uridine phosphorylase
−
** s-adenosyl-l-methionine:3-hexaprenyl-4,5-dihydroxybenzoate o-methyltransferase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.1.1.114 ec-2.1.1.114]
+
** [http://enzyme.expasy.org/EC/2.4.2.2 ec-2.4.2.2]
−
* synonymous:
+
** [http://enzyme.expasy.org/EC/2.4.2.3 ec-2.4.2.3]
−
** dhhb methyltransferase
 
−
** dhhb-mt
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[3-HEXAPRENYL-45-DIHYDROXYBENZOATE]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[3-HEXAPRENYL-4-HYDROXY-5-METHOXYBENZOATE]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[Pi]][c] '''+''' 1 [[URIDINE]][c] '''<=>''' 1 [[RIBOSE-1P]][c] '''+''' 1 [[URACIL]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ13007]]
+
* Gene: [[SJ03195]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7233]]:
+
* [[PWY-5532]], nucleoside and nucleotide degradation (archaea):
−
** '''3''' reactions found over '''n.a''' reactions in the full pathway
+
** '''4''' reactions found over '''10''' reactions in the full pathway
−
* [[PWY-7235]], superpathway of ubiquinol-6 biosynthesis (late decarboxylation):
+
* [[PWY0-1295]], pyrimidine ribonucleosides degradation:
−
** '''3''' reactions found over '''n.a''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY3O-19]], ubiquinol-6 biosynthesis (late decarboxylation):
 
−
** '''4''' reactions found over '''8''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=left-to-right}}
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* METANETX-RXN : MNXR103377
−
{{#set: common-name=s-adenosyl-l-methionine:3-hexaprenyl-4,5-dihydroxybenzoate o-methyltransferase|hexaprenyldihydroxybenzoate methyltransferase}}
+
* RHEA:
−
{{#set: ec-number=ec-2.1.1.114}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24391 24391]
−
{{#set: synonymous=dhhb methyltransferase|dhhb-mt}}
+
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01876 R01876]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P52624 P52624]
 +
** [http://www.uniprot.org/uniprot/P43770 P43770]
 +
** [http://www.uniprot.org/uniprot/Q16831 Q16831]
 +
** [http://www.uniprot.org/uniprot/P12758 P12758]
 +
** [http://www.uniprot.org/uniprot/P19662 P19662]
 +
** [http://www.uniprot.org/uniprot/O08444 O08444]
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=uridine phosphorylase}}
 +
{{#set: ec-number=ec-2.4.2.3|ec-2.4.2.2}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=2}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:20, 18 March 2021

Reaction URPHOS-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5532, nucleoside and nucleotide degradation (archaea):
    • 4 reactions found over 10 reactions in the full pathway
  • PWY0-1295, pyrimidine ribonucleosides degradation:
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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