Difference between revisions of "URPHOS-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.8.23-RXN 2.7.8.23-RXN] == * direction: ** reversible * ec-number: ** [http://enzyme.expasy.org/...")
(Created page with "Category:reaction == Reaction URPHOS-RXN == * direction: ** reversible * common-name: ** uridine phosphorylase * ec-number: ** [http://enzyme.expasy.org/EC/2.4.2.2 ec-2.4....")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.8.23-RXN 2.7.8.23-RXN] ==
+
== Reaction URPHOS-RXN ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 +
* common-name:
 +
** uridine phosphorylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.8.23 ec-2.7.8.23]
+
** [http://enzyme.expasy.org/EC/2.4.2.2 ec-2.4.2.2]
 +
** [http://enzyme.expasy.org/EC/2.4.2.3 ec-2.4.2.3]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[1-CARBOXYVINYL-CARBOXYPHOSPHONATE]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[3-HYDROHYDROXYPHOSPHORYLPYRUVATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
* 1 [[Pi]][c] '''+''' 1 [[URIDINE]][c] '''<=>''' 1 [[RIBOSE-1P]][c] '''+''' 1 [[URACIL]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ05283]]
+
* Gene: [[SJ03195]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ05932]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ05933]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ02830]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-5532]], nucleoside and nucleotide degradation (archaea):
 +
** '''4''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY0-1295]], pyrimidine ribonucleosides degradation:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR103377
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14045 14045]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24391 24391]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R05165 R05165]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01876 R01876]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P52624 P52624]
 +
** [http://www.uniprot.org/uniprot/P43770 P43770]
 +
** [http://www.uniprot.org/uniprot/Q16831 Q16831]
 +
** [http://www.uniprot.org/uniprot/P12758 P12758]
 +
** [http://www.uniprot.org/uniprot/P19662 P19662]
 +
** [http://www.uniprot.org/uniprot/O08444 O08444]
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: ec-number=ec-2.7.8.23}}
+
{{#set: common-name=uridine phosphorylase}}
−
{{#set: nb gene associated=4}}
+
{{#set: ec-number=ec-2.4.2.3|ec-2.4.2.2}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb gene associated=1}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:20, 18 March 2021

Reaction URPHOS-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5532, nucleoside and nucleotide degradation (archaea):
    • 4 reactions found over 10 reactions in the full pathway
  • PWY0-1295, pyrimidine ribonucleosides degradation:
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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