Difference between revisions of "UTUP"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AMP-DEAMINASE-RXN AMP-DEAMINASE-RXN] == * direction: ** left-to-right * common-name: ** amp deamina...")
(Created page with "Category:reaction == Reaction RXN-6383 == * direction: ** reversible * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.116 ec-4.2.1.116] == Reaction formula == * 1 3-HY...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=AMP-DEAMINASE-RXN AMP-DEAMINASE-RXN] ==
+
== Reaction RXN-6383 ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
−
* common-name:
 
−
** amp deaminase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.5.4.17 ec-3.5.4.17]
+
** [http://enzyme.expasy.org/EC/4.2.1.116 ec-4.2.1.116]
−
** [http://enzyme.expasy.org/EC/3.5.4.6 ec-3.5.4.6]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[AMP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[IMP]][c]
+
* 1 [[3-HYDROXY-PROPIONYL-COA]][c] '''<=>''' 1 [[ACRYLYL-COA]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ10996]]
+
* Gene: [[SJ21390]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ15115]]
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
** Category: [[annotation]]
+
* Gene: [[SJ00040]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ03913]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07211]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6596]], adenosine nucleotides degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6596 PWY-6596]
+
* [[PWY-3941]], &beta;-alanine biosynthesis II:
−
** '''7''' reactions found over '''8''' reactions in the full pathway
+
** '''2''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5744]], glyoxylate assimilation:
 +
** '''4''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-7574]], propanoyl-CoA degradation II:
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5743]], 3-hydroxypropanoate cycle:
 +
** '''5''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-5789]], 3-hydroxypropanoate/4-hydroxybutanate cycle:
 +
** '''8''' reactions found over '''18''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14778 14778]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26518 26518]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00181 R00181]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03045 R03045]
−
* UNIPROT:
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/P10759 P10759]
+
{{#set: ec-number=ec-4.2.1.116}}
−
** [http://www.uniprot.org/uniprot/Q02356 Q02356]
+
{{#set: nb gene associated=4}}
−
** [http://www.uniprot.org/uniprot/P23109 P23109]
+
{{#set: nb pathway associated=5}}
−
** [http://www.uniprot.org/uniprot/P15274 P15274]
+
{{#set: reconstruction category=orthology}}
−
** [http://www.uniprot.org/uniprot/Q7M3H8 Q7M3H8]
+
{{#set: reconstruction tool=pantograph}}
−
** [http://www.uniprot.org/uniprot/Q01433 Q01433]
 
−
** [http://www.uniprot.org/uniprot/Q01432 Q01432]
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=amp deaminase}}
 
−
{{#set: ec-number=ec-3.5.4.6|ec-3.5.4.17}}
 
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=1}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana}}

Revision as of 20:42, 18 December 2020

Reaction RXN-6383

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-3941, β-alanine biosynthesis II:
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-5744, glyoxylate assimilation:
    • 4 reactions found over 13 reactions in the full pathway
  • PWY-7574, propanoyl-CoA degradation II:
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-5743, 3-hydroxypropanoate cycle:
    • 5 reactions found over 13 reactions in the full pathway
  • PWY-5789, 3-hydroxypropanoate/4-hydroxybutanate cycle:
    • 8 reactions found over 18 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=UTUP&oldid=50340"