Difference between revisions of "Ubiquinols"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SULFATE-ADENYLYLTRANS-RXN SULFATE-ADENYLYLTRANS-RXN] == * direction: ** reversible * common-name: *...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIB5PISOM-RXN RIB5PISOM-RXN] == * direction: ** reversible * common-name: ** ribose-5-phosphate iso...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SULFATE-ADENYLYLTRANS-RXN SULFATE-ADENYLYLTRANS-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIB5PISOM-RXN RIB5PISOM-RXN] ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
−
** sulfate adenylyltransferase
+
** ribose-5-phosphate isomerase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.7.4 ec-2.7.7.4]
+
** [http://enzyme.expasy.org/EC/5.3.1.6 ec-5.3.1.6]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SULFATE]][c] '''<=>''' 1 [[APS]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[RIBOSE-5P]][c] '''<=>''' 1 [[RIBULOSE-5P]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ09890]]
+
* Gene: [[SJ00411]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ04851]]
+
* Gene: [[SJ07743]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5278]], sulfite oxidation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5278 PWY-5278]
+
* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''12''' reactions found over '''15''' reactions in the full pathway
−
* [[DISSULFRED-PWY]], dissimilatory sulfate reduction I (to hydrogen sufide)): [http://metacyc.org/META/NEW-IMAGE?object=DISSULFRED-PWY DISSULFRED-PWY]
+
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''11''' reactions found over '''12''' reactions in the full pathway
−
* [[P224-PWY]], dissimilatory sulfate reduction II (to thiosulfate): [http://metacyc.org/META/NEW-IMAGE?object=P224-PWY P224-PWY]
+
* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY]
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-6683]], assimilatory sulfate reduction III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6683 PWY-6683]
+
* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''10''' reactions found over '''10''' reactions in the full pathway
−
* [[SULFMETII-PWY]], assimilatory sulfate reduction II: [http://metacyc.org/META/NEW-IMAGE?object=SULFMETII-PWY SULFMETII-PWY]
+
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''12''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY-5340]], sulfate activation for sulfonation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5340 PWY-5340]
+
* [[PWY-1861]], formaldehyde assimilation II (assimilatory RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''7''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18136 18136]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14660 14660]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00529 R00529]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01056 R01056]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q12650 Q12650]
+
** [http://www.uniprot.org/uniprot/P0A7Z0 P0A7Z0]
−
** [http://www.uniprot.org/uniprot/O33581 O33581]
+
** [http://www.uniprot.org/uniprot/Q9CDI7 Q9CDI7]
−
** [http://www.uniprot.org/uniprot/O34764 O34764]
+
** [http://www.uniprot.org/uniprot/P44725 P44725]
−
** [http://www.uniprot.org/uniprot/Q10600 Q10600]
+
** [http://www.uniprot.org/uniprot/Q58998 Q58998]
−
** [http://www.uniprot.org/uniprot/O67174 O67174]
+
** [http://www.uniprot.org/uniprot/Q9JTM5 Q9JTM5]
−
** [http://www.uniprot.org/uniprot/P21156 P21156]
+
** [http://www.uniprot.org/uniprot/Q9PP08 Q9PP08]
−
** [http://www.uniprot.org/uniprot/O23324 O23324]
+
** [http://www.uniprot.org/uniprot/P37351 P37351]
−
** [http://www.uniprot.org/uniprot/Q9JUD7 Q9JUD7]
+
** [http://www.uniprot.org/uniprot/P74234 P74234]
−
** [http://www.uniprot.org/uniprot/Q9PM66 Q9PM66]
+
** [http://www.uniprot.org/uniprot/Q55766 Q55766]
−
** [http://www.uniprot.org/uniprot/Q9JUD6 Q9JUD6]
 
−
** [http://www.uniprot.org/uniprot/P28604 P28604]
 
−
** [http://www.uniprot.org/uniprot/Q27128 Q27128]
 
−
** [http://www.uniprot.org/uniprot/P23845 P23845]
 
−
** [http://www.uniprot.org/uniprot/O43252 O43252]
 
−
** [http://www.uniprot.org/uniprot/Q43170 Q43170]
 
−
** [http://www.uniprot.org/uniprot/Q43183 Q43183]
 
−
** [http://www.uniprot.org/uniprot/Q43870 Q43870]
 
−
** [http://www.uniprot.org/uniprot/Q12555 Q12555]
 
−
** [http://www.uniprot.org/uniprot/P08536 P08536]
 
−
** [http://www.uniprot.org/uniprot/P74241 P74241]
 
−
** [http://www.uniprot.org/uniprot/O48888 O48888]
 
−
** [http://www.uniprot.org/uniprot/Q39595 Q39595]
 
−
** [http://www.uniprot.org/uniprot/Q96349 Q96349]
 
−
** [http://www.uniprot.org/uniprot/Q96541 Q96541]
 
−
** [http://www.uniprot.org/uniprot/Q9S7D8 Q9S7D8]
 
−
** [http://www.uniprot.org/uniprot/P13441 P13441]
 
−
** [http://www.uniprot.org/uniprot/P13442 P13442]
 
−
</div>
 
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=sulfate adenylyltransferase}}
+
{{#set: common-name=ribose-5-phosphate isomerase}}
−
{{#set: ec-number=ec-2.7.7.4}}
+
{{#set: ec-number=ec-5.3.1.6}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb pathway associated=6}}
 
{{#set: nb pathway associated=6}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome|output_pantograph_arabidopsis_thaliana}}

Revision as of 09:29, 27 August 2019

Reaction RIB5PISOM-RXN

  • direction:
    • reversible
  • common-name:
    • ribose-5-phosphate isomerase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P124-PWY, Bifidobacterium shunt: P124-PWY
    • 12 reactions found over 15 reactions in the full pathway
  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle): P185-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • NONOXIPENT-PWY, pentose phosphate pathway (non-oxidative branch): NONOXIPENT-PWY
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-5723, Rubisco shunt: PWY-5723
    • 10 reactions found over 10 reactions in the full pathway
  • CALVIN-PWY, Calvin-Benson-Bassham cycle: CALVIN-PWY
    • 12 reactions found over 13 reactions in the full pathway
  • PWY-1861, formaldehyde assimilation II (assimilatory RuMP Cycle): PWY-1861
    • 7 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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