Difference between revisions of "VALINE--TRNA-LIGASE-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13431 RXN-13431] == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRIMSYN3-RXN PYRIMSYN3-RXN] == * direction: ** left-to-right * common-name: ** phosphohydroxymethy...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13431 RXN-13431] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRIMSYN3-RXN PYRIMSYN3-RXN] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** phosphohydroxymethylpyrimidine kinase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1 ec-2.3.1]
+
** [http://enzyme.expasy.org/EC/2.7.4.7 ec-2.7.4.7]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ACETYL-COA]][c] '''+''' 9 [[MALONYL-COA]][c] '''+''' 13 [[NADPH]][c] '''+''' 21 [[PROTON]][c] '''=>''' 1 [[5Z8Z11Z14Z17Z-EICOSAPENTAENOATE]][c] '''+''' 9 [[CARBON-DIOXIDE]][c] '''+''' 10 [[CO-A]][c] '''+''' 13 [[NADP]][c] '''+''' 8 [[WATER]][c]
+
* 1 [[AMINO-HYDROXYMETHYL-METHYL-PYR-P]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ18183]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7050]], icosapentaenoate biosynthesis IV (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7050 PWY-7050]
+
* [[PWY-6890]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6890 PWY-6890]
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6910]], hydroxymethylpyrimidine salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6910 PWY-6910]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7357]], thiamine formation from pyrithiamine and oxythiamine (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7357 PWY-7357]
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7356]], thiamine salvage IV (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7356 PWY-7356]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7282]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7282 PWY-7282]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[previous_meneco]]; tool: [[unknown-tool]]; comment: reaction added with meneco (previous version)
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19894 19894]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R04509 R04509]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q9JTE1 Q9JTE1]
 +
** [http://www.uniprot.org/uniprot/Q9PNL2 Q9PNL2]
 +
** [http://www.uniprot.org/uniprot/Q9CI79 Q9CI79]
 +
** [http://www.uniprot.org/uniprot/Q9CG47 Q9CG47]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: ec-number=ec-2.3.1}}
+
{{#set: common-name=phosphohydroxymethylpyrimidine kinase}}
−
{{#set: nb gene associated=0}}
+
{{#set: ec-number=ec-2.7.4.7}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb gene associated=1}}
−
{{#set: reconstruction category=manual}}
+
{{#set: nb pathway associated=5}}
−
{{#set: reconstruction tool=unknown-tool}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction comment=reaction added with meneco (previous version)}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction source=previous_meneco}}
+
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus}}

Revision as of 14:28, 26 August 2019

Reaction PYRIMSYN3-RXN

  • direction:
    • left-to-right
  • common-name:
    • phosphohydroxymethylpyrimidine kinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6890, 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis: PWY-6890
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6910, hydroxymethylpyrimidine salvage: PWY-6910
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-7357, thiamine formation from pyrithiamine and oxythiamine (yeast): PWY-7357
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-7356, thiamine salvage IV (yeast): PWY-7356
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7282, 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): PWY-7282
    • 6 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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