Difference between revisions of "VALINE--TRNA-LIGASE-RXN"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13431 RXN-13431] == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRIMSYN3-RXN PYRIMSYN3-RXN] == * direction: ** left-to-right * common-name: ** phosphohydroxymethy...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN- | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRIMSYN3-RXN PYRIMSYN3-RXN] == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
+ | * common-name: | ||
+ | ** phosphohydroxymethylpyrimidine kinase | ||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/2. | + | ** [http://enzyme.expasy.org/EC/2.7.4.7 ec-2.7.4.7] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[AMINO-HYDROXYMETHYL-METHYL-PYR-P]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
+ | * Gene: [[SJ18183]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[PWY-6890]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6890 PWY-6890] |
− | ** ''' | + | ** '''2''' reactions found over '''2''' reactions in the full pathway |
+ | * [[PWY-6910]], hydroxymethylpyrimidine salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6910 PWY-6910] | ||
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-7357]], thiamine formation from pyrithiamine and oxythiamine (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7357 PWY-7357] | ||
+ | ** '''4''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-7356]], thiamine salvage IV (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7356 PWY-7356] | ||
+ | ** '''6''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-7282]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7282 PWY-7282] | ||
+ | ** '''6''' reactions found over '''9''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
− | * category: [[ | + | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
+ | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19894 19894] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R04509 R04509] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JTE1 Q9JTE1] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PNL2 Q9PNL2] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CI79 Q9CI79] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CG47 Q9CG47] | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: ec-number=ec-2. | + | {{#set: common-name=phosphohydroxymethylpyrimidine kinase}} |
− | {{#set: nb gene associated= | + | {{#set: ec-number=ec-2.7.4.7}} |
− | {{#set: nb pathway associated= | + | {{#set: nb gene associated=1}} |
− | {{#set: reconstruction category= | + | {{#set: nb pathway associated=5}} |
− | {{#set: reconstruction tool= | + | {{#set: reconstruction category=orthology|annotation}} |
− | {{#set: reconstruction comment= | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
− | {{#set: reconstruction source= | + | {{#set: reconstruction comment=n.a}} |
+ | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 14:28, 26 August 2019
Contents
Reaction PYRIMSYN3-RXN
- direction:
- left-to-right
- common-name:
- phosphohydroxymethylpyrimidine kinase
- ec-number:
Reaction formula
- 1 AMINO-HYDROXYMETHYL-METHYL-PYR-P[c] + 1 ATP[c] => 1 ADP[c] + 1 AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP[c]
Gene(s) associated with this reaction
- Gene: SJ18183
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-6890, 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis: PWY-6890
- 2 reactions found over 2 reactions in the full pathway
- PWY-6910, hydroxymethylpyrimidine salvage: PWY-6910
- 2 reactions found over 2 reactions in the full pathway
- PWY-7357, thiamine formation from pyrithiamine and oxythiamine (yeast): PWY-7357
- 4 reactions found over 6 reactions in the full pathway
- PWY-7356, thiamine salvage IV (yeast): PWY-7356
- 6 reactions found over 7 reactions in the full pathway
- PWY-7282, 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): PWY-7282
- 6 reactions found over 9 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
External links