Difference between revisions of "Wound-RNA"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=LEUCINE--TRNA-LIGASE-RXN LEUCINE--TRNA-LIGASE-RXN] == * direction: ** left-to-right * common-name:...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=IDS1 IDS1] == * direction: ** left-to-right * common-name: ** isopentenyl-diphosphate synthase == R...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=LEUCINE--TRNA-LIGASE-RXN LEUCINE--TRNA-LIGASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=IDS1 IDS1] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** leucine-trna ligase
+
** isopentenyl-diphosphate synthase
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/6.1.1.4 ec-6.1.1.4]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[LEU]][c] '''+''' 1 [[LEU-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-LEU-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1.0 [[HYDROXY-METHYL-BUTENYL-DIP]][h] '''+''' 1.0 [[NADPH]][h] '''+''' 1.0 [[PROTON]][h] '''=>''' 1.0 [[DELTA3-ISOPENTENYL-PP]][h] '''+''' 1.0 [[NADP]][h] '''+''' 1.0 [[WATER]][h]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ12222]]
+
* Gene: [[SJ04795]]
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** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ12219]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ12220]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ16362]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
 
−
** '''21''' reactions found over '''21''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11689 11689]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R03657 R03657]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/O27552 O27552]
 
−
** [http://www.uniprot.org/uniprot/P56457 P56457]
 
−
** [http://www.uniprot.org/uniprot/O51267 O51267]
 
−
** [http://www.uniprot.org/uniprot/O83595 O83595]
 
−
** [http://www.uniprot.org/uniprot/O84211 O84211]
 
−
** [http://www.uniprot.org/uniprot/Q9Z930 Q9Z930]
 
−
** [http://www.uniprot.org/uniprot/P47508 P47508]
 
−
** [http://www.uniprot.org/uniprot/P36430 P36430]
 
−
** [http://www.uniprot.org/uniprot/O66680 O66680]
 
−
** [http://www.uniprot.org/uniprot/O67646 O67646]
 
−
** [http://www.uniprot.org/uniprot/Q9ZDB1 Q9ZDB1]
 
−
** [http://www.uniprot.org/uniprot/Q9WY15 Q9WY15]
 
−
** [http://www.uniprot.org/uniprot/Q9PNK3 Q9PNK3]
 
−
** [http://www.uniprot.org/uniprot/Q9JW39 Q9JW39]
 
−
** [http://www.uniprot.org/uniprot/Q9ZJ63 Q9ZJ63]
 
−
** [http://www.uniprot.org/uniprot/Q9JXT2 Q9JXT2]
 
−
** [http://www.uniprot.org/uniprot/P43827 P43827]
 
−
** [http://www.uniprot.org/uniprot/O58698 O58698]
 
−
** [http://www.uniprot.org/uniprot/Q9CHB6 Q9CHB6]
 
−
** [http://www.uniprot.org/uniprot/P26637 P26637]
 
−
** [http://www.uniprot.org/uniprot/P75398 P75398]
 
−
** [http://www.uniprot.org/uniprot/P73274 P73274]
 
−
** [http://www.uniprot.org/uniprot/Q48955 Q48955]
 
−
** [http://www.uniprot.org/uniprot/Q48964 Q48964]
 
−
** [http://www.uniprot.org/uniprot/Q49051 Q49051]
 
−
** [http://www.uniprot.org/uniprot/P11325 P11325]
 
−
** [http://www.uniprot.org/uniprot/P07813 P07813]
 
−
** [http://www.uniprot.org/uniprot/P10857 P10857]
 
−
** [http://www.uniprot.org/uniprot/P15181 P15181]
 
−
** [http://www.uniprot.org/uniprot/Q50192 Q50192]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=leucine-trna ligase}}
+
{{#set: common-name=isopentenyl-diphosphate synthase}}
−
{{#set: ec-number=ec-6.1.1.4}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb pathway associated=0}}
−
{{#set: nb pathway associated=1}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}

Revision as of 09:29, 27 August 2019

Reaction IDS1

  • direction:
    • left-to-right
  • common-name:
    • isopentenyl-diphosphate synthase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=Wound-RNA&oldid=35078"