Manual

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 Common-nameEc-numberReconstruction toolReconstruction sourceReconstruction commentNb gene associatedNb pathway associated
Biomass rxnCurationBiomass reactionForfba00
Exchange BIOMASSCurationBiomass reactionExchange biomass to boundary00
ExchangeSeed-ADENOSYLCOBALAMINCurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-AMMONIACurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-BIOTINCurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CA+2CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CARBON-DIOXIDECurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CL-CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CO+2CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-COB-I-ALAMINCurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CPD-3CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CPD-315CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CU+CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CU+2CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-EDTACurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-FE+2CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-FE+3CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-K+CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-LightCurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-MG+2CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-MN+2CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-NA+CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-NITRATECurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-OXYGEN-MOLECULECurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-PROTONCurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-SULFATECurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-THIAMINECurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-WATERCurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-ZN+2CurationImport from mediumAdded to manage seeds from boundary to extracellular compartment00
New 23 hydroxylationCurationReaction creator cokaPathmodel inference01
New 23 reductionCurationReaction creator cokaPathmodel inference01
New delta1-2 reductionCurationReaction creator cokaPathmodel inference01
New delta24 reductionCurationReaction creator cokaPathmodel inference01
RXN-19200Ec-1.23.5CurationCokaTransformation of diatoxanthin into diadinoxanthin (second cycle of xanthophylls)01
RXN-19202Ec-1.14.13CurationCokaTransformation of diadinoxanthin into diatoxanthin (second cycle of xanthophylls)11
RXN-21829CurationReaction creator cokaCuration sterols (girard et al.)01
RXN-21830CurationReaction creator cokaCuration sterols (girard et al.)01
RXN-22198CurationReaction creator cokaGallo202011
RXN-22199CurationReaction creator cokaGallo202001
RXN-22203CurationReaction creator cokaGallo202001
RXN-22204CurationReaction creator cokaGallo202001
RXN-22205CurationReaction creator cokaGallo202001
RXN-22206CurationReaction creator cokaGallo202001
RXN-7978CurationCokaTransformation of zeaxanthin into antheraxanthin (first cycle of xanthophylls)11
RXN-7979CurationCokaTransformation of antheraxanthin into violaxanthin (first cycle of xanthophylls)12
RXN-8025CurationCokaTransformation of beta carotene into zeaxanthin (with beta cryptoxanthin as an intermediate)23
RXN-8026CurationCokaTransformation of beta carotene into zeaxanthin (with beta cryptoxanthin as an intermediate)23
RXN1F-152Ec-1.14.15.qCurationCokaTransformation of beta carotene into zeaxanthin (direct)20
Transport BIOMASSCurationBiomass reactionTransport biomass to external compartment00
TransportSeed-ADENOSYLCOBALAMINCurationImport from mediumAdded to manage seeds from extracellular to cytosol compartment00
... further results