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− | [[Category:reaction]]
| + | == ESILGEM description == |
− | == Reaction RXN-8443 == | + | |
− | * direction:
| + | ''Ectocarpus siliculosus'' is a model filamentous brown alga. It was the first brown alga to be sequenced ([doi:10.1038/nature09016 Cock et al., Nature 2010]), and the genome sequence was used to build the first brown algal genome-scale metabolic network ([doi:10.1111/tpj.12627 Prigent et al., The Plant Journal, 2014]), using a preliminary version of the AuReMe pipeline. A second version of the genome-scale metabolic network, based on an improved version of the genome assembly and annotation ([https://doi.org/10.1111/nph.14321, Cormier et al., New Phytol 2017 ] was published in 2018 ([https://doi.org/10.1371/journal.pcbi.1006146 Aite et al., Plos Comp. Biol]). Now, in a more focussed follow-up study (Girard et al., ''in preparation''), we are curating specifically the sterol biosynthesis pathways (PWY-8191, PWY-8238). |
− | ** left-to-right
| + | |
− | * ec-number:
| + | |
− | ** [http://enzyme.expasy.org/EC/2.7.1.173 ec-2.7.1.173]
| + | == Automatic reconstruction with [http://aureme.genouest.org AuReMe] == |
− | == Reaction formula ==
| + | Model summary: [[MEDIA:summary.txt|summary]] |
− | * 1 [[ATP]][c] '''+''' 1 [[CPD-8259]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[NICOTINATE_NUCLEOTIDE]][c] '''+''' 1 [[PROTON]][c]
| + | |
− | == Gene(s) associated with this reaction ==
| + | Download '''AuReMe''' Input/Output [LINK OR MEDIA data] |
− | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| + | |
− | * Gene: [[Ec-18_001430]]
| + | The automatic reconstruction of ''Ectocarpus siliculosus'' results to a Genome scale [[MEDIA:model.xml|Model]] containing 1987 reactions, 2140 metabolites, 2288 genes and 1103 pathways. This GeM was obtained based on the following sources: |
− | ** Category: [[orthology]]
| + | * Based on annotation data: |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| + | ** Tool: [http://bioinformatics.ai.sri.com/ptools/ PathwayTools] |
− | * Gene: [[Ec-04_001940]]
| + | ** Creation of a metabolic network containing 1661 reactions |
− | ** Category: [[orthology]]
| + | * Based on orthology data: |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| + | ** Tool: [http://pathtastic.gforge.inria.fr Pantograph] |
− | * Gene: [[Ec-02_003690]]
| + | ** Creation of a global metabolic network containing 440 reactions |
− | ** Category: [[orthology]]
| + | *** From template ''aragem'' creation of a metabolic network containing: 440 reactions |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| + | * Based on gap-filling: |
− | * Gene: [[Ec-08_006680]]
| + | ** Tool: [https://pypi.python.org/pypi/meneco Meneco] |
− | ** Category: [[orthology]]
| + | *** 85 reaction(s) added |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| + | * Based on expertise: |
− | * Gene: [[Ec-04_002300]]
| + | ** 80 reaction(s) added |
− | ** Category: [[orthology]]
| + | |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| + | [[FILE:venn.png|frameless|border]] |
− | * Gene: [[Ec-06_000720]]
| + | |
− | ** Category: [[orthology]]
| + | |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| + | == Collaborative curation == |
− | * Gene: [[Ec-03_001800]]
| + | * Suggest reactions to add or remove: |
− | ** Category: [[orthology]]
| + | ** Download this [[MEDIA:Add_delete_reaction.csv|form]] |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| + | * Suggest new reactions to create and add: |
− | * Gene: [[Ec-03_000730]]
| + | ** Download this [[MEDIA:Reaction_creator.csv|form]] |
− | ** Category: [[orthology]]
| + | * '''Follow the examples given in the form(s) to correctly share your suggestions''' |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| + | * Send the filled form(s) to: gem-aureme[at]inria.fr |
− | * Gene: [[Ec-13_004810]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-15_004730]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-18_001580]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-09_000670]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-20_001460]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-10_004370]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-01_003040]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-01_005280]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-20_004730]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-02_003160]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-13_004480]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-17_001910]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-13_004470]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-23_000730]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-13_004620]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-06_010590]]
| |
− | ** Category: [[orthology]] | |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | |
− | * Gene: [[Ec-25_000800]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-00_007610]]
| |
− | ** Category: [[orthology]] | |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-25_002150]] | |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-27_003090]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | |
− | * Gene: [[Ec-20_002410]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-03_005360]]
| |
− | ** Category: [[orthology]] | |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-20_003730]] | |
− | ** Category: [[orthology]] | |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-18_002880]] | |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | |
− | * Gene: [[Ec-10_000810]]
| |
− | ** Category: [[orthology]] | |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | |
− | * Gene: [[Ec-06_001940]] | |
− | ** Category: [[orthology]] | |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-04_004550]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-13_004490]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-04_000460]]
| |
− | ** Category: [[orthology]] | |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | |
− | * Gene: [[Ec-03_000720]]
| |
− | ** Category: [[orthology]] | |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | |
− | * Gene: [[Ec-11_000030]]
| |
− | ** Category: [[orthology]] | |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-14_002550]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-19_003770]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-18_001480]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-23_004280]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-06_002670]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-23_000620]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-06_002270]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-13_000540]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-03_000050]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-02_005360]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-03_000700]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-06_007660]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-02_001860]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-19_000480]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-04_001890]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-19_000130]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-13_000550]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-24_000510]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-18_001440]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-01_011080]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-12_003120]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-15_004850]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-00_006990]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-06_001850]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-02_003150]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-13_004500]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-06_001640]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-18_001470]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-19_000380]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-02_003750]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-22_003010]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-05_004440]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-18_001450]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-03_000140]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-04_001900]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-26_001500]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-15_004720]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-21_005750]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-23_001960]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-03_001790]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-08_005990]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-01_001800]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-sdr_f_000110]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-10_000570]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-01_011660]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-20_001110]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-19_000120]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-02_003700]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-02_001850]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-19_000290]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-04_001950]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-18_002840]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-06_001840]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-17_002300]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-19_000110]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-19_001520]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-03_004940]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-05_003570]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-22_003740]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-03_000780]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-02_005150]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-13_000610]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-12_003110]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-13_002040]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-15_004840]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-15_003900]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-10_004500]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-02_001820]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-19_000270]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-07_001300]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-21_001650]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-25_003640]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-16_004800]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-15_000530]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-13_002010]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-11_006290]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-04_002070]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-13_004610]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-09_000980]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-23_000190]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-04_003890]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-11_004850]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-23_000950]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-06_001650]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-11_005360]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-25_000790]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-00_002000]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-02_001910]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-21_003710]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-03_000770]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-01_001760]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-01_001850]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-13_004630]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-03_000710]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-21_005740]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-16_003140]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-25_000050]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | * Gene: [[Ec-01_002500]]
| |
− | ** Category: [[orthology]]
| |
− | *** Source: [[output_pantograph_aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
− | </div>
| |
− | == Pathway(s) ==
| |
− | * [[PWY-5381]], NAD salvage (plants):
| |
− | ** '''5''' reactions found over '''11''' reactions in the full pathway
| |
− | == Reconstruction information ==
| |
− | * category: [[orthology]]; source: [[output_pantograph_aragem]]; tool: [[pantograph]]; comment: n.a | |
− | == External links ==
| |
− | * METANETX-RXN : MNXR101960
| |
− | * RHEA:
| |
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25569 25569]
| |
− | * LIGAND-RXN:
| |
− | ** [http://www.genome.jp/dbget-bin/www_bget?R03347 R03347]
| |
− | {{#set: direction=left-to-right}}
| |
− | {{#set: ec-number=ec-2.7.1.173}}
| |
− | {{#set: nb gene associated=137}}
| |
− | {{#set: nb pathway associated=1}}
| |
− | {{#set: reconstruction category=orthology}}
| |
− | {{#set: reconstruction tool=pantograph}}
| |
− | {{#set: reconstruction comment=n.a}}
| |
− | {{#set: reconstruction source=output_pantograph_aragem}}
| |