Difference between revisions of "3-ISOPROPYLMALISOM-RXN"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY66-3 PWY66-3] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-33208 tax-332...")
(Created page with "Category:reaction == Reaction 3-ISOPROPYLMALISOM-RXN == * direction: ** reversible * common-name: ** 3-isopropylmalate dehydratase ** (2s)-2-isopropylmalate hydro-lyase (2...")
 
(7 intermediate revisions by 3 users not shown)
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY66-3 PWY66-3] ==
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== Reaction 3-ISOPROPYLMALISOM-RXN ==
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* taxonomic-range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-33208 tax-33208]
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** reversible
 
* common-name:
 
* common-name:
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** cholesterol biosynthesis ii (via 24,25-dihydrolanosterol)
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** 3-isopropylmalate dehydratase
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== Reaction(s) found ==
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** (2s)-2-isopropylmalate hydro-lyase (2-isopropylmaleate-forming)
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* [[1.14.21.6-RXN]]
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* synonymous:
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* [[RXN66-11]]
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** α-isopropylmalate isomerase
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* [[RXN66-12]]
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** 3-isopropylmalate hydro-lyase
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* [[RXN66-13]]
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** (2r,3s)-3-isopropylmalate hydro-lyase
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* [[RXN66-14]]
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** β-isopropylmalate dehydratase
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* [[RXN66-18]]
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== Reaction formula ==
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* [[RXN66-19]]
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* 1 [[CPD-9451]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[3-CARBOXY-3-HYDROXY-ISOCAPROATE]][c]
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* [[RXN66-23]]
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== Gene(s) associated with this reaction  ==
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* [[RXN66-24]]
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* Gene: [[SJ22396]]
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* [[RXN66-323]]
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** Category: [[annotation]]
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== Reaction(s) not found ==
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN66-10 RXN66-10]
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** Category: [[orthology]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN66-21 RXN66-21]
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN66-17 RXN66-17]
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN66-20 RXN66-20]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN66-22 RXN66-22]
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* Gene: [[SJ09771]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN66-16 RXN66-16]
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** Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN66-25 RXN66-25]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN66-15 RXN66-15]
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** Category: [[orthology]]
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{{#set: taxonomic-range=tax-33208}}
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: common-name=cholesterol biosynthesis ii (via 24,25-dihydrolanosterol)}}
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: nb reaction found=10}}
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: completion rate=0.56}}
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== Pathway(s)  ==
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{{#set: nb total reaction=18}}
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* [[LEUSYN-PWY]], L-leucine biosynthesis:
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered):
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** '''5''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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== External links  ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* METANETX-RXN : MNXR100826
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16296 16296]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R03968 R03968]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/Q9PLW1 Q9PLW1]
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** [http://www.uniprot.org/uniprot/Q9JU82 Q9JU82]
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** [http://www.uniprot.org/uniprot/P80858 P80858]
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** [http://www.uniprot.org/uniprot/Q9UZ07 Q9UZ07]
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** [http://www.uniprot.org/uniprot/Q9JU81 Q9JU81]
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** [http://www.uniprot.org/uniprot/Q58673 Q58673]
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** [http://www.uniprot.org/uniprot/Q02144 Q02144]
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** [http://www.uniprot.org/uniprot/P44968 P44968]
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** [http://www.uniprot.org/uniprot/Q58667 Q58667]
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** [http://www.uniprot.org/uniprot/P44438 P44438]
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** [http://www.uniprot.org/uniprot/P0A6A6 P0A6A6]
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** [http://www.uniprot.org/uniprot/Q9PLW2 Q9PLW2]
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** [http://www.uniprot.org/uniprot/Q44022 Q44022]
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** [http://www.uniprot.org/uniprot/Q44023 Q44023]
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** [http://www.uniprot.org/uniprot/Q44427 Q44427]
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** [http://www.uniprot.org/uniprot/P17279 P17279]
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** [http://www.uniprot.org/uniprot/P04787 P04787]
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** [http://www.uniprot.org/uniprot/P15717 P15717]
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** [http://www.uniprot.org/uniprot/P18250 P18250]
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** [http://www.uniprot.org/uniprot/Q02142 Q02142]
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** [http://www.uniprot.org/uniprot/P30126 P30126]
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** [http://www.uniprot.org/uniprot/P50181 P50181]
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** [http://www.uniprot.org/uniprot/P07264 P07264]
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** [http://www.uniprot.org/uniprot/P74207 P74207]
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** [http://www.uniprot.org/uniprot/O86534 O86534]
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** [http://www.uniprot.org/uniprot/O86535 O86535]
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</div>
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{{#set: direction=reversible}}
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{{#set: common-name=3-isopropylmalate dehydratase|(2s)-2-isopropylmalate hydro-lyase (2-isopropylmaleate-forming)}}
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{{#set: synonymous=&alpha;-isopropylmalate isomerase|3-isopropylmalate hydro-lyase|&beta;-isopropylmalate dehydratase|(2r,3s)-3-isopropylmalate hydro-lyase}}
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{{#set: nb gene associated=2}}
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{{#set: nb pathway associated=2}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:21, 18 March 2021

Reaction 3-ISOPROPYLMALISOM-RXN

  • direction:
    • reversible
  • common-name:
    • 3-isopropylmalate dehydratase
    • (2s)-2-isopropylmalate hydro-lyase (2-isopropylmaleate-forming)
  • synonymous:
    • α-isopropylmalate isomerase
    • 3-isopropylmalate hydro-lyase
    • (2r,3s)-3-isopropylmalate hydro-lyase
    • β-isopropylmalate dehydratase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • LEUSYN-PWY, L-leucine biosynthesis:
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-6871, 3-methylbutanol biosynthesis (engineered):
    • 5 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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