Difference between revisions of "3-ISOPROPYLMALISOM-RXN"
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(Created page with "Category:reaction == Reaction RXN-11637 == * direction: ** left-to-right * common-name: ** 16s rrna 2'-o-ribose c1402 methyltransferase * ec-number: ** [http://enzyme.expa...") |
(Created page with "Category:reaction == Reaction 3-ISOPROPYLMALISOM-RXN == * direction: ** reversible * common-name: ** 3-isopropylmalate dehydratase ** (2s)-2-isopropylmalate hydro-lyase (2...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction 3-ISOPROPYLMALISOM-RXN == |
* direction: | * direction: | ||
− | ** | + | ** reversible |
* common-name: | * common-name: | ||
− | ** | + | ** 3-isopropylmalate dehydratase |
− | * | + | ** (2s)-2-isopropylmalate hydro-lyase (2-isopropylmaleate-forming) |
− | ** | + | * synonymous: |
+ | ** α-isopropylmalate isomerase | ||
+ | ** 3-isopropylmalate hydro-lyase | ||
+ | ** (2r,3s)-3-isopropylmalate hydro-lyase | ||
+ | ** β-isopropylmalate dehydratase | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[CPD-9451]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[3-CARBOXY-3-HYDROXY-ISOCAPROATE]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ22396]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ09771]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[LEUSYN-PWY]], L-leucine biosynthesis: | ||
+ | ** '''5''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-6871]], 3-methylbutanol biosynthesis (engineered): | ||
+ | ** '''5''' reactions found over '''7''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * METANETX-RXN : MNXR100826 | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16296 16296] |
− | {{#set: direction= | + | * LIGAND-RXN: |
− | {{#set: common-name= | + | ** [http://www.genome.jp/dbget-bin/www_bget?R03968 R03968] |
− | {{#set: | + | * UNIPROT: |
− | {{#set: nb gene associated= | + | ** [http://www.uniprot.org/uniprot/Q9PLW1 Q9PLW1] |
− | {{#set: nb pathway associated= | + | ** [http://www.uniprot.org/uniprot/Q9JU82 Q9JU82] |
− | {{#set: reconstruction category=annotation}} | + | ** [http://www.uniprot.org/uniprot/P80858 P80858] |
− | {{#set: reconstruction tool=pathwaytools}} | + | ** [http://www.uniprot.org/uniprot/Q9UZ07 Q9UZ07] |
+ | ** [http://www.uniprot.org/uniprot/Q9JU81 Q9JU81] | ||
+ | ** [http://www.uniprot.org/uniprot/Q58673 Q58673] | ||
+ | ** [http://www.uniprot.org/uniprot/Q02144 Q02144] | ||
+ | ** [http://www.uniprot.org/uniprot/P44968 P44968] | ||
+ | ** [http://www.uniprot.org/uniprot/Q58667 Q58667] | ||
+ | ** [http://www.uniprot.org/uniprot/P44438 P44438] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A6A6 P0A6A6] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PLW2 Q9PLW2] | ||
+ | ** [http://www.uniprot.org/uniprot/Q44022 Q44022] | ||
+ | ** [http://www.uniprot.org/uniprot/Q44023 Q44023] | ||
+ | ** [http://www.uniprot.org/uniprot/Q44427 Q44427] | ||
+ | ** [http://www.uniprot.org/uniprot/P17279 P17279] | ||
+ | ** [http://www.uniprot.org/uniprot/P04787 P04787] | ||
+ | ** [http://www.uniprot.org/uniprot/P15717 P15717] | ||
+ | ** [http://www.uniprot.org/uniprot/P18250 P18250] | ||
+ | ** [http://www.uniprot.org/uniprot/Q02142 Q02142] | ||
+ | ** [http://www.uniprot.org/uniprot/P30126 P30126] | ||
+ | ** [http://www.uniprot.org/uniprot/P50181 P50181] | ||
+ | ** [http://www.uniprot.org/uniprot/P07264 P07264] | ||
+ | ** [http://www.uniprot.org/uniprot/P74207 P74207] | ||
+ | ** [http://www.uniprot.org/uniprot/O86534 O86534] | ||
+ | ** [http://www.uniprot.org/uniprot/O86535 O86535] | ||
+ | </div> | ||
+ | {{#set: direction=reversible}} | ||
+ | {{#set: common-name=3-isopropylmalate dehydratase|(2s)-2-isopropylmalate hydro-lyase (2-isopropylmaleate-forming)}} | ||
+ | {{#set: synonymous=α-isopropylmalate isomerase|3-isopropylmalate hydro-lyase|β-isopropylmalate dehydratase|(2r,3s)-3-isopropylmalate hydro-lyase}} | ||
+ | {{#set: nb gene associated=2}} | ||
+ | {{#set: nb pathway associated=2}} | ||
+ | {{#set: reconstruction category=orthology|annotation}} | ||
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}} |
Latest revision as of 11:21, 18 March 2021
Contents
Reaction 3-ISOPROPYLMALISOM-RXN
- direction:
- reversible
- common-name:
- 3-isopropylmalate dehydratase
- (2s)-2-isopropylmalate hydro-lyase (2-isopropylmaleate-forming)
- synonymous:
- α-isopropylmalate isomerase
- 3-isopropylmalate hydro-lyase
- (2r,3s)-3-isopropylmalate hydro-lyase
- β-isopropylmalate dehydratase
Reaction formula
- 1 CPD-9451[c] + 1 WATER[c] <=> 1 3-CARBOXY-3-HYDROXY-ISOCAPROATE[c]
Gene(s) associated with this reaction
- Gene: SJ22396
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ09771
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- LEUSYN-PWY, L-leucine biosynthesis:
- 5 reactions found over 6 reactions in the full pathway
- PWY-6871, 3-methylbutanol biosynthesis (engineered):
- 5 reactions found over 7 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
External links