Difference between revisions of "RXN-12263"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7179 PWY-7179] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-2157 tax-21...")
(Created page with "Category:reaction == Reaction RXN-12263 == * direction: ** left-to-right * common-name: ** farnesyl-diphosphate farnesyltransferase ** presqualene diphosphate synthase * e...")
 
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7179 PWY-7179] ==
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== Reaction RXN-12263 ==
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* taxonomic-range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-2157 tax-2157]
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** left-to-right
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2]
 
 
* common-name:
 
* common-name:
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** purine deoxyribonucleosides degradation i
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** farnesyl-diphosphate farnesyltransferase
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== Reaction(s) found ==
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** presqualene diphosphate synthase
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* [[ADDALT-RXN]]
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* ec-number:
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* [[DEOXYADENPHOSPHOR-RXN]]
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** [http://enzyme.expasy.org/EC/2.5.1.103 ec-2.5.1.103]
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* [[DEOXYGUANPHOSPHOR-RXN]]
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== Reaction formula ==
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* [[DEOXYINOPHOSPHOR-RXN]]
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* 2 [[FARNESYL-PP]][c] '''=>''' 1 [[CPD-465]][c] '''+''' 1 [[PPI]][c]
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== Reaction(s) not found ==
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== Gene(s) associated with this reaction  ==
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All reactions of this pathways are in present
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* Gene: [[SJ13532]]
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{{#set: taxonomic-range=tax-2157|tax-2}}
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** Category: [[annotation]]
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{{#set: common-name=purine deoxyribonucleosides degradation i}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: nb reaction found=4}}
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** Category: [[orthology]]
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{{#set: completion rate=1.0}}
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: nb total reaction=4}}
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ02885]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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== Pathway(s) ==
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* [[PWY-6105]], botryococcenes and methylated squalene biosynthesis:
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** '''2''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-5875]], staphyloxanthin biosynthesis:
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** '''1''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-6767]], 4,4'-diapolycopenedioate biosynthesis:
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** '''1''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7072]], hopanoid biosynthesis (bacteria):
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** '''1''' reactions found over '''14''' reactions in the full pathway
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== Reconstruction information  ==
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* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== External links  ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* METANETX-RXN : MNXR103264
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R00702 R00702]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/O69445 O69445]
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** [http://www.uniprot.org/uniprot/P36596 P36596]
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** [http://www.uniprot.org/uniprot/O65688 O65688]
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** [http://www.uniprot.org/uniprot/O23118 O23118]
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** [http://www.uniprot.org/uniprot/O22107 O22107]
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** [http://www.uniprot.org/uniprot/Q40472 Q40472]
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** [http://www.uniprot.org/uniprot/O22106 O22106]
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** [http://www.uniprot.org/uniprot/P53800 P53800]
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** [http://www.uniprot.org/uniprot/P53799 P53799]
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** [http://www.uniprot.org/uniprot/P53798 P53798]
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** [http://www.uniprot.org/uniprot/P29704 P29704]
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** [http://www.uniprot.org/uniprot/Q04903 Q04903]
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** [http://www.uniprot.org/uniprot/Q42761 Q42761]
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** [http://www.uniprot.org/uniprot/Q42760 Q42760]
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** [http://www.uniprot.org/uniprot/P37268 P37268]
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** [http://www.uniprot.org/uniprot/Q02769 Q02769]
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</div>
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{{#set: direction=left-to-right}}
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{{#set: common-name=presqualene diphosphate synthase|farnesyl-diphosphate farnesyltransferase}}
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{{#set: ec-number=ec-2.5.1.103}}
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{{#set: nb gene associated=2}}
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{{#set: nb pathway associated=4}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction tool=pathwaytools|pantograph}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:24, 18 March 2021

Reaction RXN-12263

  • direction:
    • left-to-right
  • common-name:
    • farnesyl-diphosphate farnesyltransferase
    • presqualene diphosphate synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6105, botryococcenes and methylated squalene biosynthesis:
    • 2 reactions found over 9 reactions in the full pathway
  • PWY-5875, staphyloxanthin biosynthesis:
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-6767, 4,4'-diapolycopenedioate biosynthesis:
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-7072, hopanoid biosynthesis (bacteria):
    • 1 reactions found over 14 reactions in the full pathway

Reconstruction information

External links





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