Difference between revisions of "SJ02922"

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(Created page with "Category:gene == Gene SJ10416 == * transcription-direction: ** negative * right-end-position: ** 102533 * left-end-position: ** 77700 * centisome-position: ** 19.84056...")
(Created page with "Category:gene == Gene SJ02922 == * transcription-direction: ** positive * right-end-position: ** 441590 * left-end-position: ** 430736 * centisome-position: ** 81.104294...")
 
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ10416 ==
+
== Gene SJ02922 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 102533
+
** 441590
 
* left-end-position:
 
* left-end-position:
−
** 77700
+
** 430736
 
* centisome-position:
 
* centisome-position:
−
** 19.84056    
+
** 81.104294    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[1.5.1.15-RXN]]
−
* [[RXN-14918]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-14919]]
+
* [[DIHYDROFOLATEREDUCT-RXN]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-2542]]
+
* [[METHYLENETHFDEHYDROG-NADP-RXN]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-2562]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[MTHFD2]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
* [[MTHFD2i]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[TOCOPHEROL-O-METHYLTRANSFERASE-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY-7436]]
+
* [[PWY-2201]]
−
** '''4''' reactions found over '''6''' reactions in the full pathway
+
** '''9''' reactions found over '''10''' reactions in the full pathway
−
* [[PWY-1422]]
+
* [[1CMET2-PWY]]
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
** '''8''' reactions found over '''9''' reactions in the full pathway
−
{{#set: transcription-direction=negative}}
+
* [[PWY-3841]]
−
{{#set: right-end-position=102533}}
+
** '''9''' reactions found over '''11''' reactions in the full pathway
−
{{#set: left-end-position=77700}}
+
* [[PWY-6614]]
−
{{#set: centisome-position=19.84056   }}
+
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5497]]
 +
** '''10''' reactions found over '''24''' reactions in the full pathway
 +
* [[CODH-PWY]]
 +
** '''4''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7909]]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-1722]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
{{#set: transcription-direction=positive}}
 +
{{#set: right-end-position=441590}}
 +
{{#set: left-end-position=430736}}
 +
{{#set: centisome-position=81.104294   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: nb reaction associated=5}}
 
{{#set: nb reaction associated=5}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=8}}

Latest revision as of 11:07, 18 March 2021

Gene SJ02922

  • transcription-direction:
    • positive
  • right-end-position:
    • 441590
  • left-end-position:
    • 430736
  • centisome-position:
    • 81.104294

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-2201
    • 9 reactions found over 10 reactions in the full pathway
  • 1CMET2-PWY
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-3841
    • 9 reactions found over 11 reactions in the full pathway
  • PWY-6614
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-5497
    • 10 reactions found over 24 reactions in the full pathway
  • CODH-PWY
    • 4 reactions found over 10 reactions in the full pathway
  • PWY-7909
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-1722
    • 3 reactions found over 3 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ02922&oldid=135032"