Difference between revisions of "SJ05770"
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(Created page with "Category:gene == Gene SJ18616 == * transcription-direction: ** positive * right-end-position: ** 186433 * left-end-position: ** 178865 * centisome-position: ** 74.022194...") |
(Created page with "Category:gene == Gene SJ02922 == * transcription-direction: ** positive * right-end-position: ** 441590 * left-end-position: ** 430736 * centisome-position: ** 81.104294...") |
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| Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ02922 == |
* transcription-direction: | * transcription-direction: | ||
** positive | ** positive | ||
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 441590 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 430736 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 81.104294 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | * [[1.5.1.15-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | * [[ | + | * [[DIHYDROFOLATEREDUCT-RXN]] |
| − | ** Category: [[ | + | ** Category: [[orthology]] |
| − | *** source: [[ | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
| − | * [[RXN | + | * [[METHYLENETHFDEHYDROG-NADP-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[MTHFD2]] | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[MTHFD2i]] | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | == Pathway(s) associated == | ||
| + | * [[PWY-2201]] | ||
| + | ** '''9''' reactions found over '''10''' reactions in the full pathway | ||
| + | * [[1CMET2-PWY]] | ||
| + | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
| + | * [[PWY-3841]] | ||
| + | ** '''9''' reactions found over '''11''' reactions in the full pathway | ||
| + | * [[PWY-6614]] | ||
| + | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
| + | * [[PWY-5497]] | ||
| + | ** '''10''' reactions found over '''24''' reactions in the full pathway | ||
| + | * [[CODH-PWY]] | ||
| + | ** '''4''' reactions found over '''9''' reactions in the full pathway | ||
| + | * [[PWY-7909]] | ||
| + | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
| + | * [[PWY-1722]] | ||
| + | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
{{#set: transcription-direction=positive}} | {{#set: transcription-direction=positive}} | ||
| − | {{#set: right-end-position= | + | {{#set: right-end-position=441590}} |
| − | {{#set: left-end-position= | + | {{#set: left-end-position=430736}} |
| − | {{#set: centisome-position= | + | {{#set: centisome-position=81.104294 }} |
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=5}} |
| + | {{#set: nb pathway associated=8}} | ||
Revision as of 15:21, 5 January 2021
Contents
Gene SJ02922
- transcription-direction:
- positive
- right-end-position:
- 441590
- left-end-position:
- 430736
- centisome-position:
- 81.104294
Organism(s) associated with this gene
Reaction(s) associated
- 1.5.1.15-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- DIHYDROFOLATEREDUCT-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- METHYLENETHFDEHYDROG-NADP-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- MTHFD2
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- MTHFD2i
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
Pathway(s) associated
- PWY-2201
- 9 reactions found over 10 reactions in the full pathway
- 1CMET2-PWY
- 8 reactions found over 9 reactions in the full pathway
- PWY-3841
- 9 reactions found over 11 reactions in the full pathway
- PWY-6614
- 3 reactions found over 3 reactions in the full pathway
- PWY-5497
- 10 reactions found over 24 reactions in the full pathway
- CODH-PWY
- 4 reactions found over 9 reactions in the full pathway
- PWY-7909
- 3 reactions found over 4 reactions in the full pathway
- PWY-1722
- 3 reactions found over 3 reactions in the full pathway
