Difference between revisions of "SJ09463"

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(Created page with "Category:gene == Gene SJ19480 == * transcription-direction: ** negative * right-end-position: ** 27974 * left-end-position: ** 21016 * centisome-position: ** 9.269624...")
(Created page with "Category:gene == Gene SJ13532 == * transcription-direction: ** negative * right-end-position: ** 324930 * left-end-position: ** 315714 * centisome-position: ** 94.46915...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ19480 ==
+
== Gene SJ13532 ==
 
* transcription-direction:
 
* transcription-direction:
 
** negative
 
** negative
 
* right-end-position:
 
* right-end-position:
−
** 27974
+
** 324930
 
* left-end-position:
 
* left-end-position:
−
** 21016
+
** 315714
 
* centisome-position:
 
* centisome-position:
−
** 9.269624    
+
** 94.46915    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[ARG-OXIDATION-RXN]]
+
* [[FARNESYLTRANSTRANSFERASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[L-AMINO-ACID-OXIDASE-RXN]]
+
* [[GPPSYN-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[L-ASPARTATE-OXID-RXN]]
+
* [[IPPISOM-RXN]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-12263]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-14971]]
+
* [[RXN-13162]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-15378]]
+
* [[RXN-13724]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-17130]]
+
* [[RXN66-281]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-9772]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
Line 42: Line 47:
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[ARGDEG-IV-PWY]]
+
* [[PWY-7492]]
 +
** '''1''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6659]]
 +
** '''1''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7517]]
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6691]]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7721]]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7736]]
 +
** '''3''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5120]]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-7720]]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6383]]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7410]]
 
** '''1''' reactions found over '''4''' reactions in the full pathway
 
** '''1''' reactions found over '''4''' reactions in the full pathway
−
* [[PYRIDNUCSYN-PWY]]
+
* [[PWY-7102]]
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''3''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-5316]]
+
* [[PWY-6859]]
−
** '''3''' reactions found over '''9''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-7342]]
+
* [[PWY-5122]]
−
** '''4''' reactions found over '''9''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[PWY-6969]]
+
* [[PWY-7141]]
−
** '''10''' reactions found over '''12''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-5690]]
+
* [[PWY-7659]]
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
** '''1''' reactions found over '''9''' reactions in the full pathway
−
* [[P105-PWY]]
+
* [[PWY-7709]]
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[TCA]]
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-7254]]
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-561]]
 
−
** '''6''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6728]]
 
−
** '''11''' reactions found over '''19''' reactions in the full pathway
 
−
* [[PWY0-1353]]
 
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-3781]]
+
* [[PWY-5123]]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7279]]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY66-398]]
 
−
** '''10''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-4302]]
 
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY0-1329]]
+
* [[PWY-7182]]
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[NONMEVIPP-PWY]]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6174]]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7560]]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7524]]
 +
** '''5''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7391]]
 +
** '''7''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-922]]
 +
** '''7''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-5875]]
 +
** '''1''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6767]]
 +
** '''1''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7072]]
 +
** '''1''' reactions found over '''14''' reactions in the full pathway
 +
* [[PWY-6105]]
 +
** '''2''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5670]]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 
</div>
 
</div>
 
{{#set: transcription-direction=negative}}
 
{{#set: transcription-direction=negative}}
−
{{#set: right-end-position=27974}}
+
{{#set: right-end-position=324930}}
−
{{#set: left-end-position=21016}}
+
{{#set: left-end-position=315714}}
−
{{#set: centisome-position=9.269624   }}
+
{{#set: centisome-position=94.46915   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=8}}
+
{{#set: nb reaction associated=7}}
−
{{#set: nb pathway associated=17}}
+
{{#set: nb pathway associated=29}}

Revision as of 11:10, 15 January 2021

Gene SJ13532

  • transcription-direction:
    • negative
  • right-end-position:
    • 324930
  • left-end-position:
    • 315714
  • centisome-position:
    • 94.46915

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7492
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-6659
    • 1 reactions found over 8 reactions in the full pathway
  • PWY-7517
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-6691
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-7721
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7736
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-5120
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-7720
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6383
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7410
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7102
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-6859
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5122
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-7141
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7659
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-7709
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5123
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7182
    • 1 reactions found over 2 reactions in the full pathway
  • NONMEVIPP-PWY
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-6174
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7560
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7524
    • 5 reactions found over 8 reactions in the full pathway
  • PWY-7391
    • 7 reactions found over 8 reactions in the full pathway
  • PWY-922
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-5875
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-6767
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-7072
    • 1 reactions found over 14 reactions in the full pathway
  • PWY-6105
    • 2 reactions found over 9 reactions in the full pathway
  • PWY-5670
    • 2 reactions found over 3 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ09463&oldid=109736"