Difference between revisions of "SJ13532"

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(Created page with "Category:gene == Gene SJ01042 == * transcription-direction: ** positive * right-end-position: ** 9214 * left-end-position: ** 3094 * centisome-position: ** 1.9576454 =...")
(Created page with "Category:gene == Gene SJ13532 == * transcription-direction: ** negative * right-end-position: ** 324930 * left-end-position: ** 315714 * centisome-position: ** 94.46915...")
 
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ01042 ==
+
== Gene SJ13532 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 9214
+
** 324930
 
* left-end-position:
 
* left-end-position:
−
** 3094
+
** 315714
 
* centisome-position:
 
* centisome-position:
−
** 1.9576454    
+
** 94.46915    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[DIHYDLIPACETRANS-RXN]]
+
* [[FARNESYLTRANSTRANSFERASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[PYRUVDEH-RXN]]
+
* [[GPPSYN-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-12508]]
+
* [[IPPISOM-RXN]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-12263]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-12583]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-13162]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN0-1132]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* [[RXN-13724]]
−
* [[RXN0-1133]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN0-1134]]
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN66-281]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
</div>
 
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[GLYCOLYSIS-TCA-GLYOX-BYPASS]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** '''3''' reactions found over '''1''' reactions in the full pathway
+
* [[PWY-7492]]
−
* [[PWY-7218]]
+
** '''1''' reactions found over '''6''' reactions in the full pathway
−
** '''7''' reactions found over '''4''' reactions in the full pathway
+
* [[PWY-6659]]
−
* [[PWY-5482]]
+
** '''1''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7517]]
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6691]]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7721]]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7736]]
 +
** '''3''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5120]]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-7720]]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6383]]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7410]]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7102]]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6859]]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5122]]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-7141]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7659]]
 +
** '''1''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7709]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5123]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7182]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[NONMEVIPP-PWY]]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6174]]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7560]]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7524]]
 +
** '''5''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7391]]
 +
** '''7''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-922]]
 +
** '''7''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6105]]
 +
** '''2''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5875]]
 +
** '''1''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6767]]
 +
** '''1''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7072]]
 +
** '''1''' reactions found over '''14''' reactions in the full pathway
 +
* [[PWY-5670]]
 
** '''2''' reactions found over '''3''' reactions in the full pathway
 
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-5537]]
+
</div>
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
{{#set: transcription-direction=negative}}
−
* [[PWY-6886]]
+
{{#set: right-end-position=324930}}
−
** '''8''' reactions found over '''5''' reactions in the full pathway
+
{{#set: left-end-position=315714}}
−
* [[PWY-7384]]
+
{{#set: centisome-position=94.46915   }}
−
** '''6''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PYRUVDEHYD-PWY]]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
{{#set: transcription-direction=positive}}
 
−
{{#set: right-end-position=9214}}
 
−
{{#set: left-end-position=3094}}
 
−
{{#set: centisome-position=1.9576454   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: nb reaction associated=7}}
 
{{#set: nb reaction associated=7}}
−
{{#set: nb pathway associated=7}}
+
{{#set: nb pathway associated=29}}

Latest revision as of 11:09, 18 March 2021

Gene SJ13532

  • transcription-direction:
    • negative
  • right-end-position:
    • 324930
  • left-end-position:
    • 315714
  • centisome-position:
    • 94.46915

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7492
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-6659
    • 1 reactions found over 8 reactions in the full pathway
  • PWY-7517
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-6691
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-7721
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7736
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-5120
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-7720
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6383
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7410
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7102
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-6859
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5122
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-7141
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7659
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-7709
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5123
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7182
    • 1 reactions found over 2 reactions in the full pathway
  • NONMEVIPP-PWY
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-6174
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7560
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7524
    • 5 reactions found over 8 reactions in the full pathway
  • PWY-7391
    • 7 reactions found over 8 reactions in the full pathway
  • PWY-922
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-6105
    • 2 reactions found over 9 reactions in the full pathway
  • PWY-5875
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-6767
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-7072
    • 1 reactions found over 14 reactions in the full pathway
  • PWY-5670
    • 2 reactions found over 3 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ13532&oldid=135773"