Difference between revisions of "SJ17783"
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(Created page with "Category:gene == Gene SJ16431 == * transcription-direction: ** negative * right-end-position: ** 562215 * left-end-position: ** 546274 * centisome-position: ** 79.42465...") |
(Created page with "Category:gene == Gene SJ22396 == * transcription-direction: ** negative * right-end-position: ** 145060 * left-end-position: ** 138496 * centisome-position: ** 78.11701...") |
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Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ22396 == |
* transcription-direction: | * transcription-direction: | ||
** negative | ** negative | ||
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 145060 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 138496 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 78.11701 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[3 | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * [[3-ISOPROPYLMALISOM-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[ACONITATEDEHYDR-RXN]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[ACONITATEHYDR-RXN]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[IMDHT_LPAREN_3c2hmp_RPAREN_]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[R-2-METHYLMALATE-DEHYDRATASE-RXN]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-13163]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-14047]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-8991]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | </div> | ||
+ | == Pathway(s) associated == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * [[LEUSYN-PWY]] | ||
+ | ** '''5''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-6871]] | ||
+ | ** '''5''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[TCA]] | ||
+ | ** '''9''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[PWY-6549]] | ||
+ | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-5392]] | ||
+ | ** '''6''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY-5690]] | ||
+ | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[P105-PWY]] | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[REDCITCYC]] | ||
+ | ** '''5''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY66-398]] | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY-7254]] | ||
+ | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-6969]] | ||
+ | ** '''10''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[FERMENTATION-PWY]] | ||
+ | ** '''11''' reactions found over '''16''' reactions in the full pathway | ||
+ | * [[GLYOXYLATE-BYPASS]] | ||
+ | ** '''6''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-5750]] | ||
+ | ** '''3''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-5913]] | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[P23-PWY]] | ||
+ | ** '''9''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY-7124]] | ||
+ | ** '''8''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-6728]] | ||
+ | ** '''11''' reactions found over '''19''' reactions in the full pathway | ||
+ | * [[PWY-5101]] | ||
+ | ** '''4''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-7698]] | ||
+ | ** '''1''' reactions found over '''13''' reactions in the full pathway | ||
+ | </div> | ||
{{#set: transcription-direction=negative}} | {{#set: transcription-direction=negative}} | ||
− | {{#set: right-end-position= | + | {{#set: right-end-position=145060}} |
− | {{#set: left-end-position= | + | {{#set: left-end-position=138496}} |
− | {{#set: centisome-position= | + | {{#set: centisome-position=78.11701 }} |
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=8}} |
+ | {{#set: nb pathway associated=20}} |
Revision as of 14:22, 26 August 2019
Contents
Gene SJ22396
- transcription-direction:
- negative
- right-end-position:
- 145060
- left-end-position:
- 138496
- centisome-position:
- 78.11701
Organism(s) associated with this gene
Reaction(s) associated
- 3-ISOPROPYLMALISOM-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- ACONITATEDEHYDR-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- ACONITATEHYDR-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- IMDHT_LPAREN_3c2hmp_RPAREN_
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- R-2-METHYLMALATE-DEHYDRATASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-13163
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN-14047
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-8991
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- LEUSYN-PWY
- 5 reactions found over 6 reactions in the full pathway
- PWY-6871
- 5 reactions found over 7 reactions in the full pathway
- TCA
- 9 reactions found over 10 reactions in the full pathway
- PWY-6549
- 8 reactions found over 9 reactions in the full pathway
- PWY-5392
- 6 reactions found over 12 reactions in the full pathway
- PWY-5690
- 8 reactions found over 9 reactions in the full pathway
- P105-PWY
- 10 reactions found over 11 reactions in the full pathway
- REDCITCYC
- 5 reactions found over 9 reactions in the full pathway
- PWY66-398
- 10 reactions found over 11 reactions in the full pathway
- PWY-7254
- 7 reactions found over 9 reactions in the full pathway
- PWY-6969
- 10 reactions found over 12 reactions in the full pathway
- FERMENTATION-PWY
- 11 reactions found over 16 reactions in the full pathway
- GLYOXYLATE-BYPASS
- 6 reactions found over 6 reactions in the full pathway
- PWY-5750
- 3 reactions found over 2 reactions in the full pathway
- PWY-5913
- 10 reactions found over 11 reactions in the full pathway
- P23-PWY
- 9 reactions found over 12 reactions in the full pathway
- PWY-7124
- 8 reactions found over 8 reactions in the full pathway
- PWY-6728
- 11 reactions found over 19 reactions in the full pathway
- PWY-5101
- 4 reactions found over 8 reactions in the full pathway
- PWY-7698
- 1 reactions found over 13 reactions in the full pathway